Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq979 134 2e-26 seq1383 89.7 6e-13 >seq979 Length=11123 Score = 134 bits (148), Expect = 2e-26 Identities = 442/682 (65%), Gaps = 10/682 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| | ||||||||||| | || || || ||||| ||||| || |||||| Sbjct 4073 GGGCACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATC 4014 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || ||||| | | | |||||| || || ||||| || Sbjct 4013 CAGAGGGCCAGGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGG 3954 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | || | ||||| || || | ||| ||||| | | || || Sbjct 3953 TCGAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGA 3894 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || || || || | ||| | |||||||| || | || | | ||| || Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 || || || || || | || ||||| |||| ||| || |||| | ||||| || Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 63592 || || || || || |||||||| || || || | ||||| || |||| | Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACT 3715 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| |||||||| || ||||| ||||| |||||| | || || || || | || Sbjct 3714 GTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTG 3655 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | ||| || || || || || | ||| || || || || || || | || | || Sbjct 3654 GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGA 3595 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTG 63768 | || ||||| ||||| || | || | | || || |||| || || | Sbjct 3594 CATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGG 3539 Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGT 63828 | |||||||| | ||||||||| || | || ||||| ||| ||| | |||| | || Sbjct 3538 CAACACGCATGATCATGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 3479 Query 63829 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888 | || |||| || || || ||||| || | ||| ||||| || || || | || Sbjct 3478 ATGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAA 3419 Query 63889 TAACCGAATTGAGCTTATCCTT 63910 | |||| | ||||| ||||| Sbjct 3418 TGGCCGAGTCGAGCTCCTCCTT 3397 >seq1383 Length=8527 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||| ||||||||||| | || | ||||| || Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| ||||| ||||| || ||||| || ||||| || || | ||| Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 |||||||| || || || |||||||| || Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629770080262080