Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq979 134 2e-26
seq1383 89.7 6e-13
>seq979
Length=11123
Score = 134 bits (148), Expect = 2e-26
Identities = 442/682 (65%), Gaps = 10/682 (1%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||||| | ||||||||||| | || || || ||||| ||||| || ||||||
Sbjct 4073 GGGCACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATC 4014
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| || || | || ||||| | | | |||||| || || ||||| ||
Sbjct 4013 CAGAGGGCCAGGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGG 3954
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
||||||||| | | | || | ||||| || || | ||| ||||| | | || ||
Sbjct 3953 TCGAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGA 3894
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || || || || | ||| | |||||||| || | || | | ||| ||
Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533
|| || || || || | || ||||| |||| ||| || |||| | ||||| ||
Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 63592
|| || || || || |||||||| || || || | ||||| || |||| |
Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACT 3715
Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652
||| |||||||| || ||||| ||||| |||||| | || || || || | ||
Sbjct 3714 GTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTG 3655
Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712
| ||| || || || || || | ||| || || || || || || | || | ||
Sbjct 3654 GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGA 3595
Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTG 63768
| || ||||| ||||| || | || | | || || |||| || || |
Sbjct 3594 CATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGG 3539
Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGT 63828
| |||||||| | ||||||||| || | || ||||| ||| ||| | |||| | ||
Sbjct 3538 CAACACGCATGATCATGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGT 3479
Query 63829 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888
| || |||| || || || ||||| || | ||| ||||| || || || | ||
Sbjct 3478 ATGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAA 3419
Query 63889 TAACCGAATTGAGCTTATCCTT 63910
| |||| | ||||| |||||
Sbjct 3418 TGGCCGAGTCGAGCTCCTCCTT 3397
>seq1383
Length=8527
Score = 89.7 bits (98), Expect = 6e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || ||||| ||| ||| ||||||||||| | || | ||||| ||
Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || |||||||| ||||| ||||| || ||||| || ||||| || || | |||
Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
|||||||| || || || |||||||| ||
Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629770080262080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |