Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq88 98.7 8e-16 >seq88 Length=36327 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||||||||||| || | ||||| |||||||| || || | || || Sbjct 33095 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCG 33036 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| |||||||||||||||| ||||| || || | || | ||| || || || | Sbjct 33035 AGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGG 32976 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | || || || ||| ||||| | ||| || || | || || || ||| Sbjct 32975 ATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 32916 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||| ||||| ||||| Sbjct 32915 CCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381341545022088