Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq979 131 2e-25
>seq979
Length=11123
Score = 131 bits (144), Expect = 2e-25
Identities = 468/727 (64%), Gaps = 10/727 (1%)
Strand=Plus/Minus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||||||||| || | || | | | || || || || || || ||||||| | |
Sbjct 4118 TCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTC 4059
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|||||||| | | | || || ||||| ||||| || |||||||| || || | ||
Sbjct 4058 CACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAG 3999
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123
||||| | | | ||||| || || ||||| || ||||||||| | |
Sbjct 3998 AGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAG 3939
Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183
| || | ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 3938 ACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCT 3879
Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243
|| || | ||| | |||||||| || | || | | ||| || || || ||||||||
Sbjct 3878 TGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAA 3819
Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303
| || ||||| |||| ||| || |||| | ||||| || | || || ||
Sbjct 3818 GTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCCG 3759
Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 72362
|| || |||||||| || || || | ||||| || |||| | || |||||||||||
Sbjct 3758 ATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACTGTCGTAGATGCCCTC 3700
Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422
|| || |||||| |||||| | || || || || | ||| || || ||
Sbjct 3699 GATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTACC 3640
Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482
|| || || | ||| || || || || || || | || | |||| || ||||| ||
Sbjct 3639 GGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGT 3580
Query 72483 CTCAATAGCTGATTCTA---TATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538
||| || | || | | || || |||| || || || |||||||| | ||
Sbjct 3579 CTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGGCAACACGCATGATCA 3524
Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598
| ||||| || | || || |||||| || | |||| | ||| || |||| |
Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464
Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658
| || || ||||| || | ||| ||||| || || || | ||| |||| | ||| |
Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGCT 3404
Query 72659 TATCCTT 72665
|||||
Sbjct 3403 CCTCCTT 3397
Score = 84.2 bits (92), Expect = 3e-11
Identities = 193/290 (67%), Gaps = 3/290 (1%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || || |||||||| || || || | || || || |||||||||
Sbjct 5282 TCCTGGTCGACAGTGAATTGAATGGGCTGGGCGGCAGCCTGGGTGCGGAGGTAGTACATG 5223
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || ||||| || |||| ||| || ||||| || || | ||| |||
Sbjct 5222 CCCGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATGCTC 5163
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| ||| |||||||| || | |||||| ||||||||||| || || | || |||
Sbjct 5162 GGCTCGCGCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAAGCGCCACGATCGGCA 5103
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||| | | || || || | |||||||||| || || || | ||| |||
Sbjct 5102 GCCATCTGAACGACGGTGCGCTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATA 5043
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075
|| || | ||| | | ||||| || || |||||||| || || ||
Sbjct 5042 TCGGTCGGGATGTTAGGGATGTTCTGGATCGAACCACCATCGGCGATGAT 4993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671088562547360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |