Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq979 131 2e-25 >seq979 Length=11123 Score = 131 bits (144), Expect = 2e-25 Identities = 468/727 (64%), Gaps = 10/727 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||||||| || | || | | | || || || || || || ||||||| | | Sbjct 4118 TCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTC 4059 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 |||||||| | | | || || ||||| ||||| || |||||||| || || | || Sbjct 4058 CACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAG 3999 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | | | ||||| || || ||||| || ||||||||| | | Sbjct 3998 AGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAG 3939 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | || | ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 3938 ACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCT 3879 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | ||| | |||||||| || | || | | ||| || || || |||||||| Sbjct 3878 TGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAA 3819 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | || ||||| |||| ||| || |||| | ||||| || | || || || Sbjct 3818 GTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCCG 3759 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 72362 || || |||||||| || || || | ||||| || |||| | || ||||||||||| Sbjct 3758 ATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACTGTCGTAGATGCCCTC 3700 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 || || |||||| |||||| | || || || || | ||| || || || Sbjct 3699 GATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTACC 3640 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482 || || || | ||| || || || || || || | || | |||| || ||||| || Sbjct 3639 GGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGT 3580 Query 72483 CTCAATAGCTGATTCTA---TATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||| || | || | | || || |||| || || || |||||||| | || Sbjct 3579 CTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGGCAACACGCATGATCA 3524 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || || |||||| || | |||| | ||| || |||| | Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| || | ||| ||||| || || || | ||| |||| | ||| | Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGCT 3404 Query 72659 TATCCTT 72665 ||||| Sbjct 3403 CCTCCTT 3397 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || |||||||| || || || | || || || ||||||||| Sbjct 5282 TCCTGGTCGACAGTGAATTGAATGGGCTGGGCGGCAGCCTGGGTGCGGAGGTAGTACATG 5223 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||| ||| || ||||| || || | ||| ||| Sbjct 5222 CCCGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATGCTC 5163 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || ||| |||||||| || | |||||| ||||||||||| || || | || ||| Sbjct 5162 GGCTCGCGCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAAGCGCCACGATCGGCA 5103 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | | || || || | |||||||||| || || || | ||| ||| Sbjct 5102 GCCATCTGAACGACGGTGCGCTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTGATA 5043 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 || || | ||| | | ||||| || || |||||||| || || || Sbjct 5042 TCGGTCGGGATGTTAGGGATGTTCTGGATCGAACCACCATCGGCGATGAT 4993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088562547360