Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1383 242 5e-59 seq979 154 2e-32 >seq1383 Length=8527 Score = 242 bits (268), Expect = 5e-59 Identities = 583/866 (67%), Gaps = 37/866 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | ||| ||| | || || Sbjct 6913 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACCTC 6972 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||| | | | | | || || |||| | || || || Sbjct 6973 TCCAAGGACCTCCACGACTGGAACAACAAGATCAAC-GACGATGAGAAGTACTTCATCTC 7031 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||||| | || ||||| |||| || || || ||||||||||| || ||| | || Sbjct 7032 TCACATCCTCGCTTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTGGTCGAGCG 7091 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| ||| | ||| | || |||| ||| ||||| ||||| ||||| ||||| Sbjct 7092 CTTCAGCGGCGAGGT--CCAGGTCCCGGAGGC-TCGCTGCTTCTACGGCTTCCAGATCAT 7148 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || ||||||| ||||| || || Sbjct 7149 GATGGAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 7208 Query 125315 G---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || || | ||| || || || || |||||||| | || | || || || || Sbjct 7209 TGCCCAGCGCACGCACCTGTTC---AATGCCATCGACACCATCCCCGCCATCCGCAAGAA 7265 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | ||||||||| |||| | ||||| | | ||| | | ||||| Sbjct 7266 GGCCGACTGGGCCCTGCGGTGGATCACTGACCAGAAGTCGACCTTTGCCCAGCGCCTGGT 7325 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || || || || ||||| |||||||| ||| ||||| ||||||| ||||| Sbjct 7326 CGCGTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCT 7385 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||||||| ||||||||||| ||||| | |||||| | || || || ||||| Sbjct 7386 CAAGAAGCGCGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTGACGA 7445 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAAC-TATCTGCGTCCCGAG--T 125607 ||| || ||| ||||| ||| || ||||| ||||| | || | | ||| || Sbjct 7446 GGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCGCACCTTAACAACCGCCCCAGCAA 7505 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 |||| || || ||| ||||| | | ||| |||||| | || || || | Sbjct 7506 GCAGGTC-----AT--TGAGGACATCATCGT------CGACGCCGTGCGCATCGAGCAGG 7552 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || ||||| |||| ||| | | || | |||||||||| ||| || ||| Sbjct 7553 AGTTCCTCACCGAGGCCCTGCCGTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGC 7612 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| ||||| || || || || || || || | ||| || ||| | | Sbjct 7613 AGTACATTGAGTTCGTCGCCGACCGCCTGCT---CGTCGCCCTCGGCAACGAGAAGGTGT 7669 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || | | || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 7670 ACCGGTCGACAAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACT 7729 Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | ||||||||| ||| |||||||| Sbjct 7730 TCTTCGAGAAGCGCGTCGGCGAGTAC 7755 >seq979 Length=11123 Score = 154 bits (170), Expect = 2e-32 Identities = 336/499 (67%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| || || ||||| || || || || || | ||| ||||| | || ||| Sbjct 3865 CGCTACGTTGACCAAGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTCGAGCCT 3924 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| ||||| ||||| || |||| | || || ||| ||| || || | Sbjct 3925 TGGCACGCCGACGTCTTTGAGTTCCTCGACCTCCGTAAGAACCACGGCAAGGAGGAAGTC 3984 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 || || | || | || || |||||| | || || | ||||||||||| ||| Sbjct 3985 CGTGCTCGCGATCTCTTCCTGGCCCTCTGGATTCCCGACCTCTTCATGAAGCGTGTCGAG 4044 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||| | | |||| || ||||||||| || || ||||| || |||||||| Sbjct 4045 AAGAACGGAG---AGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGATTGC 4101 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAG 97159 | || || ||||| |||||| ||| | |||||| | | ||||| ||| || Sbjct 4102 TATGGTGACGAGTTCGAGGCCCTGTATGAGAAGTACGAGAAGGCCGGCCGCGGTCGTAAG 4161 Query 97160 ACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 || | || | || | | | || ||| | |||||| | ||||||| ||||| || | Sbjct 4162 ACTA-TCAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAA 4220 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| |||||||||||| | || ||||| |||||||| || | ||||| Sbjct 4221 CCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCAC 4280 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGC 97339 |||| ||||||| |||||||| || || | |||||| | | || |||||| || Sbjct 4281 CATCCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTACTCGGCACCCGACGAGGTTGC 4340 Query 97340 AGTTTGCGTTCTGGCATCG 97358 || ||| ||||| ||| Sbjct 4341 CGTCTGCAACCTGGCCTCG 4359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741003287083360