Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4893 96.9 8e-15 seq88 96.9 8e-15 >seq4893 Length=312 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| ||||| | ||||| || | || || || || ||| Sbjct 278 TCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAA 219 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || |||| ||| || || ||||| || || || || ||||| ||||| | || || || Sbjct 218 ATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 159 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || || || | || ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 158 TCGATCGTGTCTG-AGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 100 Query 104548 AAATATCTGCAT 104559 || || ||||| Sbjct 99 GAAGATTTGCAT 88 >seq88 Length=36327 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || ||||| | ||| || || | || || || || || Sbjct 33305 TCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAG 33246 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| || || || || || || || |||||||||||||||| || || || Sbjct 33245 ATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACGTTG 33186 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||| || ||| || || || ||||| ||||| || || || || || || Sbjct 33185 TCGATCGTATCCGAAGATTCCACTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACG 33126 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 33125 AAGATCTGCAT 33115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || || || ||||||||||| || | ||| | ||| || Sbjct 32643 AAGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATC 32584 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || || || |||||||| || | ||| || || || || || || || || || Sbjct 32583 TTCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 32524 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | |||||| | || ||||| || || || || Sbjct 32523 CTGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGT 32464 Query 104527 CTTACCAGT 104535 ||| || || Sbjct 32463 CTTGCCGGT 32455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151309355165488