Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq113 158 1e-33 >seq113 Length=33764 Score = 158 bits (174), Expect = 1e-33 Identities = 185/250 (74%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||| |||||| ||||| ||||| | | | || ||||| | |||||| || Sbjct 33346 CCCGTGCTCCCGAACCCGCCCGCGCCCCGCACGCTCTCCTCCAGCTCCTGCACCTCGACC 33287 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 || ||||| | ||||||| || |||||||| | ||||||||| || ||| Sbjct 33286 ACGTCGGGCGTGTAAATGCGCTCGATAATGAGCTGCGCGACCCGGTCGCCCTCCTGCACC 33227 Query 5624 TCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCG 5683 ||| | ||| || | || ||||||||||| ||| ||| |||||||||||||||| Sbjct 33226 TCGTAGTCGGCGTCGGCGTGGTTGAACAGCAGCACTTTGACGGGGCCGCGGTAGTCGGCG 33167 Query 5684 TCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCC 5743 || || || ||||||||| |||||||||||||||| | || |||||||||||||| || Sbjct 33166 TCGATGACTCCCGCGCCCGTGTCGATGAAGTGCTTGGCTGCGAGGCCGGAGCGGGGGGCG 33107 Query 5744 ACGCGGCCGT 5753 | |||||||| Sbjct 33106 ATGCGGCCGT 33097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430022763585632