Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4893 89.7 5e-13 seq88 89.7 5e-13 >seq4893 Length=312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94789 CAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT 94848 || || || |||||||||||| || ||||| || | ||| || ||||| | ||| Sbjct 306 CAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCG 247 Query 94849 GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTC 94908 ||||||| ||| || || | || || | | ||||| || |||||||| || || Sbjct 246 CCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTC 187 Query 94909 TTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGT 94968 ||||| | || || | ||||||| | ||| ||||| | | || || || | ||| Sbjct 186 CTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGT 127 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| || || || ||||| ||||| Sbjct 126 AATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq88 Length=36327 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | |||| ||||| || | ||| || ||| || ||| | Sbjct 33329 CGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCA 33270 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || || | ||||| || | ||||| ||||| || ||||| || || Sbjct 33269 TCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTA 33210 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||| ||||||| | ||| || || | || || || | || || Sbjct 33209 TCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAATC 33150 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || || ||||||||||||| Sbjct 33149 GTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATGC 33113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257376428960