Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5331 145 1e-30 seq78 113 7e-21 seq688 109 9e-20 >seq5331 Length=262 Score = 145 bits (160), Expect = 1e-30 Identities = 179/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||||||||| || ||||| ||||| ||||| ||||| || ||| Sbjct 11 GACAACATCCAAGGTATCACCAAGCCTGCCATCCGACGTCTCGCTCGCCGTGGCGGTGTC 70 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| | || |||| ||||||| || | ||| | ||| |||||| | Sbjct 71 AAGCGTATCTCGGCCATGATCTACGAAGAGACCCGCGGTGTCCTCAAGTCTTTCCTCGAA 130 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 |||| || | ||| || || ||| ||||||||||| || | ||||||||||| || Sbjct 131 TCCGTCATTCGTGACGCCGTCACCTACACCGAGCACGCAAAGAGAAAGACTGTCACTTCG 190 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||| | || ||||| | || || |||||| | | | || ||||| || |||| Sbjct 191 CTTGATGTTGTGTATGCCCTCAAGCGACAAGGCAGAACCCTCTACGGTTTCGGTGGTTAG 250 Query 16700 TCTTC 16704 |||| Sbjct 251 ACTTC 255 >seq78 Length=38615 Score = 113 bits (124), Expect = 7e-21 Identities = 86/99 (87%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 3285 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 3343 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| ||||||||||| ||||||||| |||| Sbjct 3344 CCGCCGTCTGGCGCGTCGTGGTGGTGTCAAGCGTATCTC 3382 >seq688 Length=14371 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| |||| Sbjct 13196 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 13254 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| |||||||| |||||||| || ||||||||| |||||| Sbjct 13255 TCCGCCGTCTGGCGCGTCGTGGCGGTGTCAAGCGTATCTCTG 13296 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | ||| ||||||| || || |||| ||| | Sbjct 13362 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 13421 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || ||||||||| Sbjct 13422 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTCGTCTATG 13481 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| || ||||| Sbjct 13482 CCCTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 13525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069681242948