Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq979 134 2e-26
seq1383 95.1 2e-14
>seq979
Length=11123
Score = 134 bits (148), Expect = 2e-26
Identities = 469/727 (65%), Gaps = 10/727 (1%)
Strand=Plus/Minus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
||||||||||| || | || | | | || || || || | || ||||||| | |
Sbjct 4118 TCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTC 4059
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|||||||||| | || || || ||||| ||||| || |||||||| || || | ||
Sbjct 4058 CACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAG 3999
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
||||| | | | |||||| || || ||||| || ||||||||| | |
Sbjct 3998 AGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAG 3939
Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377
| || | ||||| || || | ||| ||||| | | || || || ||||| || ||
Sbjct 3938 ACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCT 3879
Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437
|| || | ||| | |||||||| || | || | | ||| || || || || || ||
Sbjct 3878 TGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAA 3819
Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497
| || ||||| |||| ||| || |||| | ||||| || || || ||
Sbjct 3818 GTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCCG 3759
Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCTC 63556
|| || |||||||| || || || | ||||| || |||| |||| ||||| |||||
Sbjct 3758 ATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACTGTCGTAGATGCCCTC 3700
Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616
||||| ||||| |||||| | || || || || | ||| || || ||
Sbjct 3699 GATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTACC 3640
Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676
|| || || | ||| || || || || || || | || | || | || ||||| ||
Sbjct 3639 GGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGT 3580
Query 63677 CTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63732
||| || | || | | || || |||| || || || |||||||| | ||
Sbjct 3579 CTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGGCAACACGCATGATCA 3524
Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792
||||||| || | || || |||||| ||| | |||| | ||| || |||| |
Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464
Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852
| || || ||||| || | ||| ||||| || || || | ||| |||||| ||| |
Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGCT 3404
Query 63853 TATCCTT 63859
|||||
Sbjct 3403 CCTCCTT 3397
>seq1383
Length=8527
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| ||| ||| ||||||||||| | || || ||||||||
Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || |||||||| ||||| ||||| || ||||| || ||||| || || | ||
Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
|||||||| || || || |||||||| ||
Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622900198633760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |