Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq979 134 2e-26 seq1383 95.1 2e-14 >seq979 Length=11123 Score = 134 bits (148), Expect = 2e-26 Identities = 469/727 (65%), Gaps = 10/727 (1%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||||||||| || | || | | | || || || || | || ||||||| | | Sbjct 4118 TCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTC 4059 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 |||||||||| | || || || ||||| ||||| || |||||||| || || | || Sbjct 4058 CACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAG 3999 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | |||||| || || ||||| || ||||||||| | | Sbjct 3998 AGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAG 3939 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | || | ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 3938 ACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCT 3879 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | ||| | |||||||| || | || | | ||| || || || || || || Sbjct 3878 TGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAA 3819 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | || ||||| |||| ||| || |||| | ||||| || || || || Sbjct 3818 GTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCCG 3759 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATACCCTC 63556 || || |||||||| || || || | ||||| || |||| |||| ||||| ||||| Sbjct 3758 ATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACTGTCGTAGATGCCCTC 3700 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 ||||| ||||| |||||| | || || || || | ||| || || || Sbjct 3699 GATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTACC 3640 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || || || | ||| || || || || || || | || | || | || ||||| || Sbjct 3639 GGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGT 3580 Query 63677 CTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 ||| || | || | | || || |||| || || || |||||||| | || Sbjct 3579 CTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGGCAACACGCATGATCA 3524 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 ||||||| || | || || |||||| ||| | |||| | ||| || |||| | Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464 Query 63793 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63852 | || || ||||| || | ||| ||||| || || || | ||| |||||| ||| | Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGCT 3404 Query 63853 TATCCTT 63859 ||||| Sbjct 3403 CCTCCTT 3397 >seq1383 Length=8527 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || ||||| ||| ||| ||||||||||| | || || |||||||| Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || |||||||| ||||| ||||| || ||||| || ||||| || || | || Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 |||||||| || || || |||||||| || Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622900198633760