Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq979 149 8e-31 seq1383 86.0 8e-12 >seq979 Length=11123 Score = 149 bits (164), Expect = 8e-31 Identities = 472/727 (65%), Gaps = 10/727 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||||||||| || | || | | || || || || || | || ||||||| | | Sbjct 4118 TCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTC 4059 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 |||||||||| | || || || ||||| ||||| || |||||||| || || | || Sbjct 4058 CACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAG 3999 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | |||||| || || ||||| || ||||||||| | | Sbjct 3998 AGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAG 3939 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || | ||||| || || | ||| ||||| | | || || || ||||| || || Sbjct 3938 ACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCT 3879 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | |||||||| || | || | | ||| || || || |||||||| Sbjct 3878 TGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAA 3819 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 || || ||||| || | ||| || |||| | ||||| || || || || Sbjct 3818 GTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCCG 3759 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 63411 || || |||||||| || || || | ||||| || |||| | || ||||||||||| Sbjct 3758 ATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGTCTTAAGACTGTCGTAGATGCCCTC 3700 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || || |||||| |||||| | || || || || | ||| || || || Sbjct 3699 GATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTACC 3640 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || || || | ||| || || || || || || | || | || | || ||||| || Sbjct 3639 GGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGT 3580 Query 63532 CTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 ||| || | || | | || || |||| || || || |||||||| | || Sbjct 3579 CTCGATGACGCGCTCCACGTTGTCTCCCCAGATG----CCGACGGCAACACGCATGATCA 3524 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 ||||||| || | || || |||||| ||| | |||| | ||| || |||| | Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 | || || ||||| || | ||| ||||| || || || | ||| |||||| ||| | Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGCT 3404 Query 63708 TATCCTT 63714 ||||| Sbjct 3403 CCTCCTT 3397 >seq1383 Length=8527 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| ||| ||| ||||||||||| | || | |||||||| Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| ||||| ||||| || ||||| || ||||| ||||| | || Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || || || || || ||||| || Sbjct 7358 CTGAAGAAGATACCCTCGACAGCAGCAAACGC 7327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633584192465600