Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq88 127 2e-24
>seq88
Length=36327
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||||| || | ||||| |||| |||||||| ||
Sbjct 32659 ATGCAAATCTTCGTCAAGACCCTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 32718
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || ||||| ||||||||
Sbjct 32719 GACACCATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 32778
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | |||||||| ||||||||| | || |||| ||||||| | |||||||||
Sbjct 32779 CAGCGCCTGATTTTTGCGGGCAAACAACTCGAGGATGGTCGCACTCTTTCGGATTACAAT 32838
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || ||| ||| || ||
Sbjct 32839 ATCCAGAAGGAAAGCACTCTGCA 32861
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || |||||||| | || || ||||||||
Sbjct 32887 ATGCAGATTTTCGTGAAGACCCTGACGGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 32946
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| || || || || || || ||||||||
Sbjct 32947 GACACGATTGACAATGTGAAGTCGAAGATCCAAGATAAGGAGGGTATCCCTCCTGACCAG 33006
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | |||||||||||||| ||| | || |||| ||| ||| || ||| |||||
Sbjct 33007 CAGCGCCTGATTTTTGCCGGCAAGCAACTCGAGGATGGTCGGACTTTGTCCGACTACAAC 33066
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||| || || ||| || || || || || ||||
Sbjct 33067 ATTCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGGCT 33104
Score = 107 bits (118), Expect = 2e-18
Identities = 137/184 (74%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AA 25078
||||||| || ||||||| | || |||||||| ||||| || ||||| || || ||
Sbjct 32453 TGACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGATACCATCGA--CAATGTTAA 32510
Query 25079 G-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137
| | || | ||| ||||| || || || || || ||||| ||||| | ||||||||||
Sbjct 32511 GTCGAAGATTCAG-GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATTTTTGCCG 32569
Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197
|||| || || ||||||| ||| ||| || ||| || ||||| ||||| || || || |
Sbjct 32570 GCAAGCAGTTGGAAGATGGTCGGACTTTGTCCGACTATAATATCCAAAAGGAGTCGACCC 32629
Query 25198 TACA 25201
| ||
Sbjct 32630 TCCA 32633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433296122767340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |