Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq88 127 2e-24 >seq88 Length=36327 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| || | ||||| |||| |||||||| || Sbjct 32659 ATGCAAATCTTCGTCAAGACCCTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 32718 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| |||||||| Sbjct 32719 GACACCATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 32778 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| ||||||||| | || |||| ||||||| | ||||||||| Sbjct 32779 CAGCGCCTGATTTTTGCGGGCAAACAACTCGAGGATGGTCGCACTCTTTCGGATTACAAT 32838 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || ||| ||| || || Sbjct 32839 ATCCAGAAGGAAAGCACTCTGCA 32861 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || |||||||| | || || |||||||| Sbjct 32887 ATGCAGATTTTCGTGAAGACCCTGACGGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 32946 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| || || || || || || |||||||| Sbjct 32947 GACACGATTGACAATGTGAAGTCGAAGATCCAAGATAAGGAGGGTATCCCTCCTGACCAG 33006 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| ||| | || |||| ||| ||| || ||| ||||| Sbjct 33007 CAGCGCCTGATTTTTGCCGGCAAGCAACTCGAGGATGGTCGGACTTTGTCCGACTACAAC 33066 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || ||| || || || || || |||| Sbjct 33067 ATTCAGAAGGAGAGCACCCTCCACTTGGTCCTCCGGCT 33104 Score = 107 bits (118), Expect = 2e-18 Identities = 137/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AA 25078 ||||||| || ||||||| | || |||||||| ||||| || ||||| || || || Sbjct 32453 TGACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGATACCATCGA--CAATGTTAA 32510 Query 25079 G-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 | | || | ||| ||||| || || || || || ||||| ||||| | |||||||||| Sbjct 32511 GTCGAAGATTCAG-GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATTTTTGCCG 32569 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 |||| || || ||||||| ||| ||| || ||| || ||||| ||||| || || || | Sbjct 32570 GCAAGCAGTTGGAAGATGGTCGGACTTTGTCCGACTATAATATCCAAAAGGAGTCGACCC 32629 Query 25198 TACA 25201 | || Sbjct 32630 TCCA 32633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433296122767340