Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2403 113 4e-20
seq88 105 6e-18
seq2035 93.3 4e-14
>seq2403
Length=4098
Score = 113 bits (124), Expect = 4e-20
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279
|||| || || || || || | || ||||| || |||| || || || || || | |
Sbjct 2357 TGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGG 2298
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| ||| | ||| || |||| || || || ||||||||||| ||||| ||||| || |
Sbjct 2297 ACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGC 2238
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399
| || || || ||||| ||||||||| | |||||| |||||| |||| || |||||||
Sbjct 2237 AGCGCCTGATCTTTGCGGGCAAACAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACA 2178
Query 22400 TTCAAAA 22406
|||| ||
Sbjct 2177 TTCAGAA 2171
>seq88
Length=36327
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || || |||| || || ||||| | ||
Sbjct 32659 ATGCAAATCTTCGTCAAGACCCTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 32718
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || || ||||||||||||||||| || || ||
Sbjct 32719 GACACCATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 32778
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| |||||||| | |||||| ||||| | || ||||||||
Sbjct 32779 CAGCGCCTGATTTTTGCGGGCAAACAACTCGAGGATGGTCGCACTCTTTCGGATTACAAT 32838
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || ||| ||| | || | || |||| ||||||| |||
Sbjct 32839 ATCCAGAAGGAAAGCACTCTGCACCTTGTCCTGCGCCTGCGCGGTGGT 32886
Score = 102 bits (112), Expect = 7e-17
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| ||||| || | |||||| | ||| || | ||
Sbjct 32455 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGATACCATCGACAATGTTAAGTCG 32514
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| || || ||||| || || || || || |||||||||||
Sbjct 32515 AAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATTTTTGCCGGCAAG 32574
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416
||||| || ||| || || | ||||| || || || ||||| || || |||
Sbjct 32575 CAGTTGGAAGATGGTCGGACTTTGTCCGACTATAATATCCAAAAGGAGTCGACC 32628
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || ||| | ||||| ||||||||| | |
Sbjct 33115 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATTACTCTGGAAGTGGAATCTTCG 33174
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | |||| ||| ||||| || ||||||||||| || || || ||
Sbjct 33175 GATACGATCGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 33234
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || || ||||| ||||| |||||| || || | ||||| ||||||
Sbjct 33235 CAGCGTTTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCCGACTACAAC 33294
Query 22399 ATTCAAAAAGA 22409
|| || || ||
Sbjct 33295 ATCCAGAAGGA 33305
>seq2035
Length=5329
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | | |
Sbjct 1248 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 1189
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || || ||||||||||| || || || || ||
Sbjct 1188 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1129
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | |||||| | | ||| |||| ||||||||
Sbjct 1128 CAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCAGGACCCTCTCGGATTACAAT 1069
Query 22399 ATTCAAAAAGA 22409
|| || || ||
Sbjct 1068 ATCCAGAAGGA 1058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419697123234340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |