Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1383 156 9e-33 seq1226 86.0 1e-11 >seq1383 Length=8527 Score = 156 bits (172), Expect = 9e-33 Identities = 531/821 (65%), Gaps = 15/821 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | |||||||| |||||||||||||||||||||||| Sbjct 7736 TCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTC 7677 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||| ||| | ||| || || |||| | |||||| || || ||||| | Sbjct 7676 GACCGGTACACCTTCTCGTTGCCGAGGGCGACGAGCAGGCGGTCGGCGACGAACTCAATG 7617 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||||| | || || || | ||||| || | Sbjct 7616 TACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGCACGGCAGGGCCTCGGTGAGG 7557 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| ||| || || || || | | || ||| | ||||| | | | | Sbjct 7556 AACTCCTGCTCGATGCGCACGGCGTCGACGATGATGTCCTCAATGACCTGCTTGCTGGGG 7497 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| || | ||| |||| || | | || | ||| ||||||||||| Sbjct 7496 CGG-TTGTTA---AGGTGCGAGAACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTC 7441 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| ||||||||| | |||||| ||||| | || || ||| ||||||| Sbjct 7440 ACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCA 7381 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | ||||| || ||| | | |||||||||| | | || || || Sbjct 7380 GAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCAAACGCGACCAG 7321 Query 251979 GCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| ||||| |||||| | | | | || | | ||||| | |||||||| Sbjct 7320 GCGCTGGGCAAAGGTCGACTTCTGGTCAGTGATCCACCGCAGGGCCCAGTCGGCCTTCTT 7261 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | | |||||||| || ||||| |||| || || | |||| |||| |||| Sbjct 7260 GCGGATGGCGGGGATGGTGTCGATGGCATTGAACAGGTGCGTGCGCTGGGCAGGCTCCTT 7201 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | |||| || || ||||| |||| || |||||| || | | ||||| Sbjct 7200 GATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTG 7141 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAAT 252215 | | | ||||| || || ||| | ||| || | ||| | | | Sbjct 7140 GAAGCCGTAGAAGCAGCGAGCCTCCGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAG 7081 Query 252216 GTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTG 252275 |||||| | || ||||| || | || ||||| | || ||| |||||||| Sbjct 7080 GTTCTCGTTGACGATGCCGTCCGACGCGGCGAAGAAAGCGAGGATGTGAGAGATGAAGTA 7021 Query 252276 ACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACT 252333 |||||||||||||| ||||| ||||||| | ||||| | ||||| || Sbjct 7020 CTTCTCATCGTCGTTGATCTTGTTGTTCCAGTCGTGGAGGTCCT--TGGAGAGGTCAATC 6963 Query 252334 TCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || | |||||||| | | | | |||||||||||||| Sbjct 6962 TCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 6922 >seq1226 Length=9422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || |||| ||||| ||||| ||| Sbjct 3405 GGCGAGGACCTGTGCAACTGCACCTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTTAAC 3346 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| |||| | ||||||| ||| | || |||||||| ||| ||||| || | Sbjct 3345 CAGACCAGCCTGCGCCTCAAGCGCGGCCAGCGTTATGGTCTGTGCGGCCCCAACGGTTCC 3286 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 3285 GGCAAGTCCACCCTGATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 3227 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 || || | ||| || | || ||||||||| Sbjct 3226 GAGCGAAGTCAAGACCGTCTTCGTCGAGCACGAC 3193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027757310956276