Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1383 201 2e-46 seq88 167 4e-36 seq2035 152 9e-32 seq2403 140 6e-28 seq1226 95.1 2e-14 seq5961 89.7 9e-13 seq1697 87.8 3e-12 >seq1383 Length=8527 Score = 201 bits (222), Expect = 2e-46 Identities = 568/861 (66%), Gaps = 15/861 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| |||||||||||||| || || |||||||||||||| |||||| | Sbjct 7773 CATGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 7714 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGG-TTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||| || ||| |||||||||||| |||||| || ||| | | || ||| || | Sbjct 7713 GAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTCGAC-CGGTACACCTTCTCGTTGC 7655 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| || || | |||||| || |||||||| |||||||| ||||||||| |||| Sbjct 7654 CGAGGGCGACGAGCAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGT 7595 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| | || | ||| || | ||| ||| | ||| |||| ||| || || | Sbjct 7594 TCATGCCGAGCAGGGCGCACGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATGCGCACGG 7535 Query 10174 CTTCCTCGACGATG--CTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 | || ||| |||| ||| | ||| | | ||| | | ||||| || | ||| Sbjct 7534 CGTCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC-GGTTGTT---AAGGTGCGAG 7479 Query 10230 TACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 |||| || | || | |||||| |||||||| || ||||| ||||||||| Sbjct 7478 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 7419 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCG 10349 || ||| ||||||||||| || || || |||||||| |||| | || | ||| Sbjct 7418 AAGGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCG 7359 Query 10350 GAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAG---GAGCG 10405 ||| | | |||||| || ||| | | ||||| ||||||| || ||| || Sbjct 7358 CTGAAGAAGATACCCTCGACAGCA-GCAAACGCGACCAGGCGCTGGGCAAAGGTCGACTT 7300 Query 10406 GTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | | | | | |||||| | |||||||| | | ||| ||||| || || Sbjct 7299 CTGGTCAGTGATCCACCGCAGGGCCCAGTCGGCCTTCTTGCGGATGGCGGGGATGGTGTC 7240 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAG 10525 ||| || | ||| || | | |||| || |||| || | |||| |||||| Sbjct 7239 GATGGCATTGAACAGGTGCGTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAG 7180 Query 10526 GGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGTGC 10585 |||||| ||| ||||| | |||| | |||| | ||||||| || || Sbjct 7179 GGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGC 7120 Query 10586 CGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATC 10645 | ||| || ||| || || ||| | | ||||||||| | || ||||| || Sbjct 7119 CTCCGGGACCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTC 7060 Query 10646 GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTT 10705 | || ||||| |||||||||| |||||||| |||||| ||||| | || Sbjct 7059 CGACGCGGCGAAGAAAGCGAGGATGTGAGAGATGAAGTACTTCTCATCGTCGTTGATCTT 7000 Query 10706 TTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGC 10765 | |||||| | |||| | ||| | | |||||| |||||||||||| || Sbjct 6999 GTTGTTCCAGTCGTGGAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAAGAAGC 6940 Query 10766 AACGGCCTTCTTGTACATCTG 10786 ||||||||||||||||||| Sbjct 6939 CTCGGCCTTCTTGTACATCTG 6919 >seq88 Length=36327 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || ||| || |||||||| || ||||| Sbjct 33341 CCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGAC 33282 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || |||||||| || ||||| || | | || ||||| || || Sbjct 33281 AGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGG 33222 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||| ||||||| ||||| || || | ||||| ||| Sbjct 33221 ATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACT 33162 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || |||||||||||||||||||| |||||||| Sbjct 33161 TCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| || ||| || || ||||| || ||||| || Sbjct 32885 CCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAA 32826 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || || | || ||||| || ||| Sbjct 32825 AGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 32766 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| ||||||||||| | || || || Sbjct 32765 ATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACC 32706 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || |||||||||||||| || ||||| Sbjct 32705 TCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 >seq2035 Length=5329 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || ||||| || ||||| ||| Sbjct 1022 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAG 1081 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| ||||| || | |||||| || || || || || | || ||||| || || Sbjct 1082 AGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 1141 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | |||||| ||||| ||||| ||| || || || Sbjct 1142 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTC-GCTCGACTCCAC 1200 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||| ||||| |||||||| Sbjct 1201 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq2403 Length=4098 Score = 140 bits (154), Expect = 6e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || ||||| || | ||||| || | ||| || || || || || Sbjct 2171 TTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATC 2230 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || |||||||| |||||||| |||||||| || ||||| | |||||| ||| Sbjct 2231 AGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 2290 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || || || | ||||||||| || |||||||||||||| ||||| Sbjct 2291 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 2350 Query 68454 ATCTGCA 68460 ||||||| Sbjct 2351 ATCTGCA 2357 >seq1226 Length=9422 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||| ||||| | ||| | || || ||||| | |||||| |||||| | || Sbjct 3232 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATCAGGGTGGACTTGCCGGAACC 3291 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936 |||||| ||| || || ||| | | |||||||||| | |||| || ||| || Sbjct 3292 GTTGGGGCCGCACAGACCATAACGCTGGCCGCGCTTGAGGCGCAGGCTGGTCTGGTTAAG 3351 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||||||| |||| ||||| || ||||| ||| | |||||||||||| ||||| || Sbjct 3352 CAGGATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCACAGGTCCTCGCCCTCTTC 3411 >seq5961 Length=206 Score = 89.7 bits (98), Expect = 9e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || |||||||| || || ||||||||||| || ||||| ||||||| ||||| ||| Sbjct 204 TGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTG 145 Query 68400 TCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || ||| ||||| || |||| ||||| || || || || || ||||| ||||| || || Sbjct 144 TC-GCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTG 86 Query 68459 CAT 68461 ||| Sbjct 85 CAT 83 >seq1697 Length=6694 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051 |||||| ||||||||||||||||||||||| ||| | | || ||| ||| ||||| Sbjct 3137 TGGGTCATCTTTGACGAAATCCACTACATGCGTGACAAGACTCGCGGTGTCGTCTGGGAG 3078 Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111 |||| | | |||||| ||||||| | | | ||||||||||| || || | ||| Sbjct 3077 GAAACCATCATCCTCCTCCCGGACAAGGTTAAATTCGTCTTTTTGTCAGCCACCATCCCC 3018 Query 196112 AACGCCCGTGACTTTGCCTTGTGGTTCTCGAAGATGCA 196149 |||||| | || ||| |||| || | ||||| || Sbjct 3017 AACGCCTTCCAGTTCGCCGAGTGGATCGCCAAGATTCA 2980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921552863589920