Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4893 93.3 3e-14 seq88 93.3 3e-14 >seq4893 Length=312 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 33909 CAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-C 33967 ||| | |||||||| || | ||||||||||||||| |||||||| || || | || | Sbjct 306 CAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTC-GCTGAGAGTCC 248 Query 33968 GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 || |||| ||||| |||||||| || || ||||| |||||||| ||| || | || || Sbjct 247 GCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCT 188 Query 34028 CTTTGTCC 34035 | |||||| Sbjct 187 CCTTGTCC 180 >seq88 Length=36327 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| || |||| || || ||||||||||||||||||||||| || | ||| || Sbjct 33104 AGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGA 33045 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || || | ||||||||||||||| |||||||||||||| || Sbjct 33044 CCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTC 33001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397033190600872