Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq88 140 8e-28 seq5961 95.1 3e-14 seq1383 91.5 3e-13 >seq88 Length=36327 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | |||||||| || |||||||| || || | Sbjct 32885 CCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAA 32826 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | |||||| || || || ||||| ||||| || | || Sbjct 32825 AGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 32766 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| |||| || ||||| || || | ||| || || || Sbjct 32765 ATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACC 32706 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||||||||| ||||||||||| || ||||| Sbjct 32705 TCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || | || | || || || || ||||| || |||||| Sbjct 33344 TGGCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCG 33285 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || || || || || |||||||||| |||||| || ||| Sbjct 33284 GACAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGG---TCT 33228 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || |||||||| || || | || ||||| || || | ||| ||| Sbjct 33227 GGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGAT 33168 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||||||||| || || ||||||||||| |||||||| Sbjct 33167 TCCACTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || | || | ||||| || || || || || |||| Sbjct 33117 CATG-CCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGT 33059 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || || || || || | ||| || || || || ||||| ||||| || | Sbjct 33058 CGGACAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAG 32999 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||| ||||| |||| ||||| || || || | || ||| | Sbjct 32998 GAGGGATACCCTCCTTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACT 32939 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 32938 CAACCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| ||||| || | || || ||||||||||||||||||| Sbjct 32657 CCACCACGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGAC 32598 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| || || || || || || ||||| ||||| || ||| Sbjct 32597 AAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 32538 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || |||| || || || || || | ||| || || || Sbjct 32537 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACC 32478 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 || || ||||| ||||| ||||||| Sbjct 32477 TCAAGGGTGATGGTCTTGCCGGTCA 32453 >seq5961 Length=206 Score = 95.1 bits (104), Expect = 3e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || |||||||| || ||| || ||||| || || | ||||||||||| Sbjct 192 GGGATCCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTGTCGCTCGATTC 134 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| || || || ||||| ||||| || ||||| Sbjct 133 AACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 83 >seq1383 Length=8527 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || |||| ||||| || | || ||||| || || || || ||||| || || || | Sbjct 7583 TGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGC 7642 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | ||||| |||||| |||| || ||||||| ||| ||||| Sbjct 7643 TCGTCGCCCTCGGCAACGAGAAGGTGTACCGGTCGACAAACCCCTTCGACTTCATGGAGA 7702 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || |||| || ||||| ||||||||||| ||||| ||| |||| || || Sbjct 7703 ACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 7757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179563169952408