Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq88 140 8e-28
seq5961 95.1 3e-14
seq1383 91.5 3e-13
>seq88
Length=36327
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || || || || | |||||||| || |||||||| || || |
Sbjct 32885 CCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAA 32826
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | |||||| || || || ||||| ||||| || | ||
Sbjct 32825 AGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 32766
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| |||| || ||||| || || | ||| || || ||
Sbjct 32765 ATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACC 32706
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||||||||| ||||||||||| || |||||
Sbjct 32705 TCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659
Score = 123 bits (136), Expect = 6e-23
Identities = 168/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| | || || | || | || || || || ||||| || ||||||
Sbjct 33344 TGGCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCG 33285
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || || || || || || || || || |||||||||| |||||| || |||
Sbjct 33284 GACAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGG---TCT 33228
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || || || |||||||| || || | || ||||| || || | ||| |||
Sbjct 33227 GGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGAT 33168
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || || ||||||||||| || || ||||||||||| ||||||||
Sbjct 33167 TCCACTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115
Score = 109 bits (120), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||||||||| | || || | || | ||||| || || || || || ||||
Sbjct 33117 CATG-CCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGT 33059
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | || || || || || | ||| || || || || ||||| ||||| || |
Sbjct 33058 CGGACAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAG 32999
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || ||||| ||||| |||| ||||| || || || | || ||| |
Sbjct 32998 GAGGGATACCCTCCTTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACT 32939
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || | ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 32938 CAACCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
Score = 91.5 bits (100), Expect = 3e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| ||||| || | || || |||||||||||||||||||
Sbjct 32657 CCACCACGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGAC 32598
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || ||||| || || || || || || ||||| ||||| || |||
Sbjct 32597 AAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 32538
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| || || || || || | ||| || || ||
Sbjct 32537 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACC 32478
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451
|| || ||||| ||||| |||||||
Sbjct 32477 TCAAGGGTGATGGTCTTGCCGGTCA 32453
>seq5961
Length=206
Score = 95.1 bits (104), Expect = 3e-14
Identities = 89/111 (80%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422
||||| ||||| || |||||||| || ||| || ||||| || || | |||||||||||
Sbjct 192 GGGATCCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTGTCGCTCGATTC 134
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||||||||| || || || ||||| ||||| || |||||
Sbjct 133 AACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 83
>seq1383
Length=8527
Score = 91.5 bits (100), Expect = 3e-13
Identities = 125/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209
|| |||| ||||| || | || ||||| || || || || ||||| || || || |
Sbjct 7583 TGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGC 7642
Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
|| || ||||| | ||||| |||||| |||| || ||||||| ||| |||||
Sbjct 7643 TCGTCGCCCTCGGCAACGAGAAGGTGTACCGGTCGACAAACCCCTTCGACTTCATGGAGA 7702
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324
|| || |||| || ||||| ||||||||||| ||||| ||| |||| || ||
Sbjct 7703 ACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 7757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179563169952408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |