Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq4893 138 1e-27
seq2035 131 2e-25
seq88 109 6e-19
seq2403 98.7 1e-15
seq5961 87.8 2e-12
>seq4893
Length=312
Score = 138 bits (152), Expect = 1e-27
Identities = 163/217 (75%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|| |||||| ||||| ||||||||||| || || ||||| || ||||||||| ||||
Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| | |||||| || ||||| || || ||||||||||| | || | || |||||||||
Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181
Query 42116 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 42171
| ||| || |||| ||| | | | |||||| |||| ||||| || | ||| |
Sbjct 180 CTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TCCACCTCCAGCGTAA 125
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || ||||| || || |||||||| |||||||||||
Sbjct 124 TCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
>seq2035
Length=5329
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || ||||||||||| | || |||| | || || |||||||| |||
Sbjct 1052 GTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCA 1111
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
|| || || || ||||||||||| | || | || |||||||||| ||| || |||
Sbjct 1112 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1171
Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191
| | | | ||||||||||| ||||| || | ||||| || |||||||| || |||
Sbjct 1172 ACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 1231
Query 42192 TTTACAAAGATTTGCAT 42208
|| || ||||| |||||
Sbjct 1232 TTCACGAAGATCTGCAT 1248
>seq88
Length=36327
Score = 109 bits (120), Expect = 6e-19
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| || | || |||||||| || || ||||| || | ||||||||| |
Sbjct 33330 ACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACC 33271
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | |||||| || ||||| || | ||||||||||| | || | | ||||||
Sbjct 33270 ATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTT 33211
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
||| ||| | |||| |||| ||| | | | ||| || |||||||| || | ||
Sbjct 33210 ATCC-TGAATCTTTGACTTGA-CGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTA 33153
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || ||||| || ||||| |||||
Sbjct 33152 ATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||| ||||| ||||| || ||||||||||| | ||||| || | || || || ||
Sbjct 32861 TGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGT 32802
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
|| || || || || || ||||||||||| | || | | |||||||||| || | ||
Sbjct 32801 TTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC-TGGATCTT 32743
Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | | ||| | | | |||||| || ||||| |||| ||||| || || || ||
Sbjct 32742 CGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 32683
Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || |||||||||||
Sbjct 32682 CAGGGTCTTGACGAAGATTTGCAT 32659
Score = 93.3 bits (102), Expect = 5e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||||||||||| ||||| ||||| || | || |||||| | || ||
Sbjct 33095 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCG 33036
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| || || || || || ||||||||||| | || | | |||||| || |
Sbjct 33035 AGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGG 32976
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | | | | |||||| ||| || || || | |||||||| ||
Sbjct 32975 ATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 32916
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || ||||| || || || |||||
Sbjct 32915 CCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
>seq2403
Length=4098
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| ||||| ||||| |||| ||||| || | || || ||||| || || || || |
Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| |||||||| || ||||| || ||||| || |
Sbjct 2289 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 2348
Query 42199 AGATTTGCA 42207
|||| ||||
Sbjct 2349 AGATCTGCA 2357
>seq5961
Length=206
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 42085 GCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACC 42143
|||||||||||| || | | ||||||||| ||| || |||| ||| | | | |
Sbjct 206 GCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATC 148
Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203
|||||||||||||| || || | |||||| || ||||| || || |||||||| ||||||
Sbjct 147 GTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATT 88
Query 42204 TGCAT 42208
|||||
Sbjct 87 TGCAT 83
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543171814594240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |