Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq979 246 3e-60 seq1383 107 2e-18 seq88 107 2e-18 seq4893 89.7 5e-13 seq2403 87.8 2e-12 >seq979 Length=11123 Score = 246 bits (272), Expect = 3e-60 Identities = 1004/1553 (65%), Gaps = 51/1553 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || ||||| || || | | || | ||| ||| | | Sbjct 4933 GGTTGACAACCTGGAACTCACCAGCCAAGACACGACGCTGGTAGATGTTGGACGTGTAGG 4874 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| ||||| || ||||| | ||| | |||||||||||| ||| | Sbjct 4873 GCTCGAAGCATTCGTTGTTGCCCAGGATTTGCGACGTCGAGGCGGTCGGCATGGGCGCGA 4814 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | ||| ||||| | || ||| | || | | |||| | ||| | ||| |||| Sbjct 4813 GGAGCAAGCTGTTCCGGACACCATGCTCCTTGATCTTGGCCTTGAGCGCGTCCCAGTCCC 4754 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265 | || | | ||| || ||||||||||||||||||| | | || ||| | | |||| Sbjct 4753 AGAGGCCGGTCGGCGTGACGTTCCACATGTCGTACTGGAGGATAC-CCTGGGATACCGGG 4695 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCAGCTAGCC--TC 153322 | || || | || ||| |||| | | | |||| |||| ||||| | || | || Sbjct 4694 GAT-CCTTCATAGGTCGAGTATGTGCCTTGCTCCTTGG-CCAGATCGCA-CGAGGCGGTC 4638 Query 153323 -GAGC-GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCG 153380 |||| ||| |||| ||||| ||| |||||| ||||| || | || || Sbjct 4637 AGAGCCGCGTGATAG---ATGGTCTCGAAGATTTGCTTATTCAGCTCACGAGCCTCGGGA 4581 Query 153381 CTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCG 153440 |||| | |||||||| ||| || || || |||||||| ||||||| |||||||||| Sbjct 4580 GACTCGAAAGGCATGCGAAGCGCCAGGAAAGCATCGGCCAGGCCCTGGACACCGACGCCG 4521 Query 153441 ATGGGTCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTATGGGATAGTGATTGC 153495 ||||| || || | ||||||| ||||| || | | || ||||| ||| Sbjct 4520 ATGGGGCGGTGGCGCATGTTGCTGTTGTAAGCCTC---CTGG--ACCGGGTAGTGGTTGA 4466 Query 153496 GATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGA 153555 ||||| || ||||| |||||||| ||||| |||| | | | | || |||| || Sbjct 4465 CGTCGATGATCTTGTTCAGGTTGCGAACCACGACTTGGGCGACTTCGTGCAGCTTCTGGA 4406 Query 153556 AATCATAGGT---CATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGAT 153612 | |||||| | | | || | || ||| | || | ||| | || ||||| | Sbjct 4405 AGTCATAGACACCCTTGTTGTAGTCG---ACGAACTGAGGAAGGGCCAGCGAGGCCAGGT 4349 Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672 | |||||||| ||| |||| | ||||| | |||||| | ||| |||||| || Sbjct 4348 TGCAGACGGCAACCTCGTCGGGTGCCGAGTACTCGATGATCTCAGTGCACAGGTTGGAGC 4289 Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 ||| ||| | || | ||| ||||| ||||| ||||| || ||| |||||| Sbjct 4288 TGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCA 4229 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCG 153789 || | || |||||||||| || | |||| ||| | ||| || | || | Sbjct 4228 TGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGC---TTTTGGG 4172 Query 153790 CTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACT 153849 | | || ||| |||||| | ||||||| ||| ||||| ||| |||| Sbjct 4171 CCTTGATAGTCTTACGACCGCGGCCGGCCTTCTCGTACTTCTCATACAGGGCCTCGAACT 4112 Query 153850 CGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATAT 153909 |||| || ||||| ||||| |||||||| |||| | || |||||||| | |||| Sbjct 4111 CGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCTC 4052 Query 153910 CGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC 153969 ||| | ||| || |||||| || || || | |||||| || | ||| |||| Sbjct 4051 CGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAGAGATCGC 3992 Query 153970 GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA--TTGAGCACGCTATAGATGTC 154027 | || | |||||| ||| ||| || | || | ||| | | ||| ||| Sbjct 3991 GAGCACGGACTTCCTCCTTGCCGTGGTTC--TTACGGAGGTCGAGGAACTCAAAGACGTC 3934 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATC 154084 ||||||||| || || | ||||| ||| | |||||| |||| || || || || || Sbjct 3933 GGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGGTC 3874 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCC 154144 |||| ||| | | ||||||||||| || | |||||| | ||| | | ||||| Sbjct 3873 AACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAAGTGCC 3814 Query 154145 GTTGGTCGAATTGATCT-TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 |||||| ||| | || | || || || | | || | ||| | ||| |||| Sbjct 3813 GTTGGTGCCGGCGATGTATGAT-CCAGTCGCACGGATGCGGTGGATGTTGAGGCCGATGC 3755 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 |||| ||| | ||| || || |||| |||| || | ||||||||| ||||| Sbjct 3754 CGCCTGCCAT-CTTGGAAATCATGGCGCAAGTC-TTAAGACTGTCGTAGATGCCCTCGAT 3697 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 ||| || || | | ||| || ||| || || | | || || || | | | ||| Sbjct 3696 GCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTG-GGCCTGAGGGGTACCGG 3638 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||||||||| || || || || | || | | ||| | | ||| || | Sbjct 3637 CGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATGTCT 3578 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 ||||| || || | | || || ||||||| || || ||||||| |||||||| Sbjct 3577 CGATGACGCGCTCCACGTTGTCTCCCCAGATGCCGACGGCAACACGCATGATCATGTGCT 3518 Query 154441 GCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGT 154500 | || || ||| | | | || | ||||| ||| ||| || ||||| ||| Sbjct 3517 GTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGGTCTTGA 3458 Query 154501 AACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 | || || |||| ||| | || || | |||| | ||||||| |||||| Sbjct 3457 AGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGCCGAGTCGAGC 3405 >seq1383 Length=8527 Score = 107 bits (118), Expect = 2e-18 Identities = 494/766 (64%), Gaps = 31/766 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| || ||| || || ||| ||| | | || ||||||||||| | || || Sbjct 7006 AACGACGATGAGAAGTACTTCATCTCTCACATCCTCGCTTTCTTCGCCGCGTCGGACGGC 7065 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTCG-AGGCGCA 52204 ||||| ||| ||||| ||||| | | |||||| | ||| | | || |||| | Sbjct 7066 ATCGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGGTCCCGGAGGCTCG 7124 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 7125 CTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCTGAGACCTACTCCCTGCT 7184 Query 52265 CATTGAGCAGCTG-ATAAAAGA---TGAGCACGAGCGCGACACGCTGCTGAATGCGTTCG 52320 |||||| || || || || || || || | || || ||| ||| | ||||| ||| Sbjct 7185 CATTGA-CACCTACATCAAGGAGCCTGCCCA-GCGCACG-CAC-CTGTTCAATGCCATCG 7240 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 | | | || | | ||||| ||||| | ||||| || ||||||| | | | Sbjct 7241 ACACCATCCCCGCCATCCGCAAGAAGGCCGACTGGGCCCTGCGGTGGATCACTGACCAGA 7300 Query 52381 CCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG 52440 | || | ||| ||||| |||| || || || |||||||| | || || || Sbjct 7301 AGTCGACCTTTGCCCAGCGCCTGGTCGCGTTTGCTGCTGTCGAGGGTATCTTCTTCAGCG 7360 Query 52441 GCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCA 52500 | ||||||| ||||||| | | || | | ||| | |||||||||||||| ||| Sbjct 7361 GTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACCTTCT 7420 Query 52501 GCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTAC 52559 ||||||| | || ||||| ||||| || || ||||| ||||| || ||||| || | Sbjct 7421 CCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTT-- 7478 Query 52560 AAGACGCGCGTGACCGAAAAATTGGATTCGG---ACACGATCCTGAG--CATGTTCAAGG 52614 | ||| ||| || | | | | || | |||| ||| || | Sbjct 7479 ----CTCGC---ACCTTAACAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCG 7531 Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674 | || ||| ||||| ||||||| | || | || |||||| || ||||| |||| Sbjct 7532 ACGCCGTGCGCATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCGTGCGCCCTGCTCGGCA 7591 Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 ||||| | | ||| ||||||| ||||| || || || || ||| | || | Sbjct 7592 TGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCC 7651 Query 52735 TCGGGCAGCCA-AAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTT 52791 || |||| | | ||| | | || ||| || || || || || ||| | ||||| | Sbjct 7652 TC-GGCAACGAGAAG--GTGTACCGGTCGACAAACCCCTTCGACTTCATGGAGAACATCT 7708 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || | |||||||||||||| ||||||||||| ||||||||||| Sbjct 7709 CTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 7754 >seq88 Length=36327 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| || ||| || ||||||||||| || |||| | | Sbjct 33078 CTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAA 33019 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 || || ||||| ||||| ||||| ||||| || || || ||| || || | ||| Sbjct 33018 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGGATCTTCGACTTCACATT 32959 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||| | |||||| ||||| | || | || || || ||||| || || | Sbjct 32958 G-TCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCA 32900 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 32899 CGAAAATCTGCAT 32887 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || || ||||| || | ||| || |||||||||||||| || | | | Sbjct 32849 TCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAA 32790 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TT 138541 || || ||||| ||||| ||||| ||||| || ||||| ||| || | |||| || Sbjct 32789 ATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTC-GACTTAACGTT 32731 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | |||||||| ||||||||||||| || | || || || ||||| || || | Sbjct 32730 GT-CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGA 32672 Query 138602 CAAAAATCTGCAT 138614 | || || ||||| Sbjct 32671 CGAAGATTTGCAT 32659 >seq4893 Length=312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||| | ||| ||| |||||| | || || || | | Sbjct 279 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 220 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || || ||||| ||||||||||| || || || ||||| ||| || || | | Sbjct 219 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 160 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||||||| | ||| | ||| || ||||| || || ||||| Sbjct 159 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 100 Query 138603 AAAAATCTGCAT 138614 || || ||||| Sbjct 99 GAAGATTTGCAT 88 >seq2403 Length=4098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| | ||| || |||||||| ||||| || | | ||| Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| ||||| || || || || || ||||| ||| || || | |||| Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTG- 2287 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | || ||||| || || || || || Sbjct 2288 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACG 2347 Query 138604 AAAATCTGCA 138613 || ||||||| Sbjct 2348 AAGATCTGCA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224957001920