Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq979 95.1 2e-14 seq353 86.0 1e-11 >seq979 Length=11123 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||| ||||||| | |||||| | | | | || ||||||||||| Sbjct 5280 CTGGTCGACAGTGAATTGAATGGGCTGGGCGGCAGCCTGGGTGCGGAGGTAGTACATGCC 5221 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || || || ||| ||| | ||||||| | | |||| || | | || Sbjct 5220 CGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATGCTCGG 5161 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| |||||||||||| || |||||| || ||||||||| ||||| ||||| || | Sbjct 5160 CTCGCGCATGTGAATGTTGAGCGACTGGGACTGATCGATGAAA-GCGCCACGATCGGCAG 5102 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| | | | ||| ||| || || ||||| || |||||| Sbjct 5101 CCATCTGAACGACGGTGCGCTGAGAGATTTCCCAAACGGTCTTG 5058 >seq353 Length=20357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 116106 TACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGCT 116164 |||||| | || ||| ||||||||| ||||||| || || ||| | || ||||||||||| Sbjct 5856 TACCAACGCTCGTGC-GACATGGGGCTGGGCGTGCCGTTCAACATCGCCAGCTACGCGCT 5914 Query 116165 ACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTAT 116224 ||||| || || |||| || || ||||||| ||| ||| ||| || Sbjct 5915 GCTGACGCACATGCTGGCGCACGTGTGCGACCTGGTGCCCGGGTCGCTGACCCACGTCAT 5974 Query 116225 TGGGGACGCGCACATCTACACCAACCATGTGG-CGCAGCTCGAGCTGCAGGTGAAGCGGG 116283 || ||||||||| | ||| ||||| |||| ||| ||||||| |||| || |||| | Sbjct 5975 GGGCGACGCGCACGTGTACCTGAACCACGTGGACGC-GCTCGAGACGCAGCTGCAGCGCG 6033 Query 116284 AGATAAGGCC 116293 || ||||| Sbjct 6034 AGCCGAGGCC 6043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095205540160