Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq88 132 1e-25
seq4893 118 2e-21
seq2403 98.7 2e-15
seq2035 98.7 2e-15
>seq88
Length=36327
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||||||||| |||||| |||| ||||||||| | || ||||
Sbjct 33335 CGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTC 33276
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||| |||||| || |||||||| | |||||||||||| || || ||
Sbjct 33275 CGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCC 33216
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||||||||||| ||| ||| |||| || || | | ||| || ||||
Sbjct 33215 TCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGA 33156
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| |||||||| || || || || || ||
Sbjct 33155 GTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTG 33118
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | |||||| || |||||| || | ||||||||| | |||||||| |||||
Sbjct 33098 AGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCC 33039
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||| || || || ||||||||||| ||| || || || ||
Sbjct 33038 TCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 32979
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | ||||||| | || || ||||| ||||| |||
Sbjct 32978 TGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTC 32919
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| || || ||||| ||||| ||
Sbjct 32918 TTTCCCGTCAGGGTCTTCACGAAAATCTG 32890
Score = 118 bits (130), Expect = 2e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| |||||||||||||||| || ||||| | |||||||| ||||||
Sbjct 32642 AGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCT 32583
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| ||||| || || || ||||||||||| || || || || |||
Sbjct 32582 TCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 32522 TGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTC 32463
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 32462 TTGCCGGT 32455
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||||||||| ||||| ||||| |||| ||||| || | | |||
Sbjct 32879 CGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTG 32820
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || || || || || || || || ||||||||||| ||| ||| ||
Sbjct 32819 CGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCC 32760
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 32759 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 32700
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || || || |||||
Sbjct 32699 GTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTG 32662
>seq4893
Length=312
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
|||||||| || | ||| | || |||||| |||| ||||||||| | |||||
Sbjct 305 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 246
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
|| || |||| |||||| || ||||| || || ||||||||||||||| ||| || ||
Sbjct 245 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 186
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||| ||||| ||| ||| |||| ||||||| | || || |||| |||
Sbjct 185 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 126
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||| || || || || || || || |||||
Sbjct 125 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTG 91
>seq2403
Length=4098
Score = 98.7 bits (108), Expect = 2e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| || | ||||||||||| | ||| | ||||| || ||||| || || || ||||
Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || ||||||||||| || ||| || || ||||| ||||| ||| || |
Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| |||||||||||||| || ||||| |
Sbjct 2289 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 2348
Query 199620 AAATTTG 199626
| || ||
Sbjct 2349 AGATCTG 2355
>seq2035
Length=5329
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||| |||| ||||| || | | ||||| |||||
Sbjct 1037 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCC 1096
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| || ||||||||||| || || || || |||
Sbjct 1097 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1156
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||||| | | || || || | ||||| |||
Sbjct 1157 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 1216
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || ||||| || || ||
Sbjct 1217 TTGCCCGTGAGGGTCTTCACGAAGATCTG 1245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178830426624412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |