Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq88 132 1e-25 seq4893 118 2e-21 seq2403 98.7 2e-15 seq2035 98.7 2e-15 >seq88 Length=36327 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||||||||| |||||| |||| ||||||||| | || |||| Sbjct 33335 CGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTC 33276 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || |||||||| | |||||||||||| || || || Sbjct 33275 CGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCC 33216 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| ||| |||| || || | | ||| || |||| Sbjct 33215 TCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGA 33156 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| || || || || || || Sbjct 33155 GTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTG 33118 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||| || | ||||||||| | |||||||| ||||| Sbjct 33098 AGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCC 33039 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||| || || || ||||||||||| ||| || || || || Sbjct 33038 TCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 32979 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||||||| | || || ||||| ||||| ||| Sbjct 32978 TGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTC 32919 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || ||||| ||||| || Sbjct 32918 TTTCCCGTCAGGGTCTTCACGAAAATCTG 32890 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| |||||||||||||||| || ||||| | |||||||| |||||| Sbjct 32642 AGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCT 32583 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||| || || || ||||||||||| || || || || ||| Sbjct 32582 TCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 32522 TGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTC 32463 Query 199598 TTACCCGT 199605 || || || Sbjct 32462 TTGCCGGT 32455 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||| ||||| ||||| |||| ||||| || | | ||| Sbjct 32879 CGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTG 32820 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || || || || || ||||||||||| ||| ||| || Sbjct 32819 CGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCC 32760 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 32759 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 32700 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || || ||||| Sbjct 32699 GTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTG 32662 >seq4893 Length=312 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||||||| || | ||| | || |||||| |||| ||||||||| | ||||| Sbjct 305 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 246 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || |||| |||||| || ||||| || || ||||||||||||||| ||| || || Sbjct 245 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 186 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| ||| |||| ||||||| | || || |||| ||| Sbjct 185 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 126 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || || || || ||||| Sbjct 125 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTG 91 >seq2403 Length=4098 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||||| | ||| | ||||| || ||||| || || || |||| Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || ||| || || ||||| ||||| ||| || | Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| |||||||||||||| || ||||| | Sbjct 2289 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 2348 Query 199620 AAATTTG 199626 | || || Sbjct 2349 AGATCTG 2355 >seq2035 Length=5329 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||| |||| ||||| || | | ||||| ||||| Sbjct 1037 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCC 1096 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||||||||| || || || || ||| Sbjct 1097 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1156 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || || | ||||| ||| Sbjct 1157 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 1216 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || ||||| || || || Sbjct 1217 TTGCCCGTGAGGGTCTTCACGAAGATCTG 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178830426624412