Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4893 150 2e-31 seq2035 136 4e-27 seq88 132 5e-26 seq2403 123 3e-23 seq5961 102 9e-17 >seq4893 Length=312 Score = 150 bits (166), Expect = 2e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||| ||||| || |||||||| ||||| ||||||||| ||||| ||| |||| Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGA 46556 | ||||||| ||||| ||| | | | |||||| |||| ||||| |||| ||| | Sbjct 180 CTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TCCACCTCCAGCGTAA 125 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || || ||||||||||| Sbjct 124 TCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq2035 Length=5329 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || || | || |||||||| ||||||||||| || || || || | | || || Sbjct 1039 CACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTC 1098 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 1099 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 1158 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| | | | ||||||||||| ||||| || | ||||| || || Sbjct 1159 GATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTT 1218 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || || ||||| ||||| Sbjct 1219 GCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq88 Length=36327 Score = 132 bits (146), Expect = 5e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| ||||| || | ||||||||||| ||||| ||||| Sbjct 33348 TTACTGGCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTA 33289 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| ||||| || | || || | ||||||||| ||||| ||||| ||||||||||| Sbjct 33288 GTCGGACAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTC 33229 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||| ||| ||||| ||||| ||| | | | ||| || | Sbjct 33228 TGGGGGGATACCCTCCTTATCCTGAATCTTTGACTTGA-CGTTGTCGATCGTATCCGAAG 33170 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| |||| || || || || ||||| || || || || ||||| ||||| Sbjct 33169 ATTCCACTTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || |||| || || ||||| ||||||||||| || || |||||||| | Sbjct 32873 CGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCA 32814 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| || ||||| || || |||| |||||||||||| | || | | ||||||| Sbjct 32813 TCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTG 32754 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||| | ||| | | | |||||| || ||||| || | ||||| Sbjct 32753 TCCTGGATCTTCGACTTAA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 32695 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || || || ||||||||||| Sbjct 32694 AGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| || || ||||||||||| | ||| || | || ||||| ||||||||| Sbjct 33083 GTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCGAGTTGCTTGCCG 33024 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || |||| |||||||||||| | || | | |||||| || ||||||| ||| Sbjct 33023 GCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGGATCTTCGACTTC 32964 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| ||| || || |||| |||||||| || |||||||| || Sbjct 32963 ACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCCGTCAGGGTC 32904 Query 46577 TTAACAAAGATTTGCAT 46593 || || || || ||||| Sbjct 32903 TTCACGAAAATCTGCAT 32887 Score = 113 bits (124), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| |||||||| | ||| || | || || | |||||||||||| || Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| ||| | || |||||||||| |||||| ||| | | Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 32503 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | || || || ||||| || | |||||||| ||||| |||| Sbjct 32502 GTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 32453 >seq2403 Length=4098 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 46395 ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGC 46454 ||| ||| |||| || || |||||||| || |||||||| | || |||||||| |||| Sbjct 2160 ATGAACTGACCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGC 2219 Query 46455 CGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCT 46514 | || || |||| |||||||||||||| || | || |||||||||| ||||||| || Sbjct 2220 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACT 2279 Query 46515 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574 ||| | | | ||||| || || || || | |||||||| || ||||| || | Sbjct 2280 TGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGG 2339 Query 46575 TTTTAACAAAGATTTGCA 46592 | || || ||||| |||| Sbjct 2340 TCTTCACGAAGATCTGCA 2357 >seq5961 Length=206 Score = 102 bits (112), Expect = 9e-17 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACC 46528 |||||||||||| ||| | | ||||||||| |||||| |||||| ||| | | | | Sbjct 206 GCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTTGTCGATC 148 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 |||||||||||||| || |||| |||||| || ||||| || || || || || |||||| Sbjct 147 GTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATT 88 Query 46589 TGCAT 46593 ||||| Sbjct 87 TGCAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565195752762720