Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1985 239 6e-58 seq288 134 2e-26 seq55 86.0 8e-12 >seq1985 Length=5503 Score = 239 bits (264), Expect = 6e-58 Identities = 431/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||||||| || || || || |||| ||||| || |||||||| Sbjct 3028 TCGAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCAGTCGACTTGACCTCGAAGATACCC 2969 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 2968 TCCTCAATGGTCAGGAGGGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 2909 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| ||||||||||| || || || ||||| || || || Sbjct 2908 TTGCGCTCGCCCTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCCGCAGTAGGCTCG 2849 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || ||| || || ||||| | || || || || ||||| || Sbjct 2848 TTGATGATGCGCAGGACGTTAAGACCGGCAATGAGACCGGCGTCCTTGGTGGCTTGACGC 2789 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || || || |||| |||| | ||||| Sbjct 2788 TGGGAGTCGTTGAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACGGTGCCGCCGAGG 2729 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || ||||| || |||| ||| || | | Sbjct 2728 TAAGACTCAGCAGTCTCACGCATCTTGGTCAGGACCATGGAAGAAACCTCCTCCGGGGTG 2669 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || ||| || || || || || || || || ||||| || |||||| | | Sbjct 2668 AAGGTCTTCTGCTCGCCCTTGAACTCGACCTCGATGATGGGCTT---GCCAGCACGGTCG 2612 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || | ||| | | | | ||||||||| | || |||| || | ||||| | Sbjct 2611 ATGATCTTGAAGGGGAAGTGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGG 2552 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| || || || || ||||| | ||||||||||| |||||||| Sbjct 2551 CCAATGAGGCGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTCTTG 2492 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | ||||| || || ||| |||| ||||| || Sbjct 2491 GCGGCATCTCCAATGAGACGCTC---GGTGTCCGTGAAGGCCACGAACGACGGGGTGGTG 2435 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || ||||| || ||||||||||| Sbjct 2434 CGGTTACCCTGGTCATTGGCAATAATTTC 2406 >seq288 Length=22706 Score = 134 bits (148), Expect = 2e-26 Identities = 226/324 (70%), Gaps = 5/324 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || || || || ||||| || ||| || || | || Sbjct 3919 TCGAAATCCTCACCACCAAGATGGGTGTCACCGGCGGTGGCCAGGACCTCGAACACGCCC 3978 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | ||||||||| || ||||||||||| ||||| | | || | Sbjct 3979 TGGTCGATGGACAGGAGCGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGA-- 4036 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || ||| | | | |||| || || ||||| |||||||| || || || || || Sbjct 4037 -TC-TGGCGCTCGCCCTGGGTCTTGTCAAGGCCGTAGGCGATAGCGGCAGCGGTGGGCTC 4094 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||||| ||| ||| |||||||| || | | ||||| || || || || || Sbjct 4095 GTTGACGATACGGAGAACGTTAAGGCCAGCGATCATACCGGCATCCTTGGTAGCCTGGCG 4154 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||||||||| || ||||| |||| ||||| ||||| || || Sbjct 4155 CTGGTTGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGGGTGACCTTCTTGCCAAG 4214 Query 7756 ATACGATTCCGCGATATCTTTCAT 7779 || | || ||| | || ||||| Sbjct 4215 GTAGGCCTCGGCGGTCTCCTTCAT 4238 >seq55 Length=43020 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 |||||||||||| || ||||| | ||||| || || || || | | || || ||| Sbjct 24121 CTTATCGAGACCATATGCGATTGATGCCGCGGTGGGCTCGTTCACGACGCGGAGGACGTT 24180 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 ||||| || || || | || || || || ||||||| |||| ||||| |||||||| Sbjct 24181 GAGGCCCGCGATGGTGCCGGCGTCCTTGGTGGCTTGTCTTTGCTTGTCGTTGAAGTAGGC 24240 Query 7717 CGGGACCGTTACGACCGCGTCCGTGAC 7743 ||||||||| || || || | | |||| Sbjct 24241 CGGGACCGTGACCACGGCATGCTTGAC 24267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635084879230240