Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1985 239 6e-58
seq288 134 2e-26
seq55 86.0 8e-12
>seq1985
Length=5503
Score = 239 bits (264), Expect = 6e-58
Identities = 431/629 (69%), Gaps = 6/629 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || || ||||||||||| || || || || |||| ||||| || ||||||||
Sbjct 3028 TCGAAGTCCTCGCCACCCAAGTGGGTGTCACCAGCAGTCGACTTGACCTCGAAGATACCC 2969
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || ||||||||||| || || || ||||| |||
Sbjct 2968 TCCTCAATGGTCAGGAGGGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 2909
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| ||||||||||| || || || ||||| || || ||
Sbjct 2908 TTGCGCTCGCCCTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCCGCAGTAGGCTCG 2849
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || || || || ||| || || ||||| | || || || || ||||| ||
Sbjct 2848 TTGATGATGCGCAGGACGTTAAGACCGGCAATGAGACCGGCGTCCTTGGTGGCTTGACGC 2789
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| |||||||| ||||| || || || |||| |||| | |||||
Sbjct 2788 TGGGAGTCGTTGAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACGGTGCCGCCGAGG 2729
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || || | || ||| ||||| || ||||| || |||| ||| || | |
Sbjct 2728 TAAGACTCAGCAGTCTCACGCATCTTGGTCAGGACCATGGAAGAAACCTCCTCCGGGGTG 2669
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| ||| || || || || || || || || ||||| || |||||| | |
Sbjct 2668 AAGGTCTTCTGCTCGCCCTTGAACTCGACCTCGATGATGGGCTT---GCCAGCACGGTCG 2612
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| | ||| | | | | ||||||||| | || |||| || | ||||| |
Sbjct 2611 ATGATCTTGAAGGGGAAGTGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGG 2552
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || || ||||| || || || || ||||| | ||||||||||| ||||||||
Sbjct 2551 CCAATGAGGCGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTCTTG 2492
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || || || ||||| || | ||||| || || ||| |||| ||||| ||
Sbjct 2491 GCGGCATCTCCAATGAGACGCTC---GGTGTCCGTGAAGGCCACGAACGACGGGGTGGTG 2435
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085
|| || || ||||| || |||||||||||
Sbjct 2434 CGGTTACCCTGGTCATTGGCAATAATTTC 2406
>seq288
Length=22706
Score = 134 bits (148), Expect = 2e-26
Identities = 226/324 (70%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | || || || || ||||| || ||| || || | ||
Sbjct 3919 TCGAAATCCTCACCACCAAGATGGGTGTCACCGGCGGTGGCCAGGACCTCGAACACGCCC 3978
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | ||||||||| || ||||||||||| ||||| | | || |
Sbjct 3979 TGGTCGATGGACAGGAGCGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGA-- 4036
Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| | || ||| | | | |||| || || ||||| |||||||| || || || || ||
Sbjct 4037 -TC-TGGCGCTCGCCCTGGGTCTTGTCAAGGCCGTAGGCGATAGCGGCAGCGGTGGGCTC 4094
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| | ||||| ||| ||| |||||||| || | | ||||| || || || || ||
Sbjct 4095 GTTGACGATACGGAGAACGTTAAGGCCAGCGATCATACCGGCATCCTTGGTAGCCTGGCG 4154
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| |||||||||||||| || ||||| |||| ||||| ||||| || ||
Sbjct 4155 CTGGTTGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGGGTGACCTTCTTGCCAAG 4214
Query 7756 ATACGATTCCGCGATATCTTTCAT 7779
|| | || ||| | || |||||
Sbjct 4215 GTAGGCCTCGGCGGTCTCCTTCAT 4238
>seq55
Length=43020
Score = 86.0 bits (94), Expect = 8e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
|||||||||||| || ||||| | ||||| || || || || | | || || |||
Sbjct 24121 CTTATCGAGACCATATGCGATTGATGCCGCGGTGGGCTCGTTCACGACGCGGAGGACGTT 24180
Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
||||| || || || | || || || || ||||||| |||| ||||| ||||||||
Sbjct 24181 GAGGCCCGCGATGGTGCCGGCGTCCTTGGTGGCTTGTCTTTGCTTGTCGTTGAAGTAGGC 24240
Query 7717 CGGGACCGTTACGACCGCGTCCGTGAC 7743
||||||||| || || || | | ||||
Sbjct 24241 CGGGACCGTGACCACGGCATGCTTGAC 24267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635084879230240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |