Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq88 138 3e-27 seq4893 136 9e-27 seq2035 113 1e-19 seq2403 107 4e-18 >seq88 Length=36327 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| |||||| || || || ||||||||||| | |||||| | ||||| ||| Sbjct 32867 ACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCG 32808 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || || || || ||||| |||||||| || || ||||| || Sbjct 32807 AGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 32748 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| ||| ||||| || ||||| | ||||| Sbjct 32747 ATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTC 32688 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 32687 CCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 >seq4893 Length=312 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| | ||| ||| || || || ||||| ||| ||||| | | Sbjct 305 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 246 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | |||||| || ||||| || || || || ||||| ||||||||||| || Sbjct 245 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 186 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || || ||||| || || ||||| || || ||| Sbjct 185 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 126 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | || |||||||| | |||||| Sbjct 125 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq2035 Length=5329 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || ||||||||||| | || || || ||||| || Sbjct 1040 ACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCA 1099 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 1100 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 1159 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || || || ||||| ||| ||||| |||||||| | ||| Sbjct 1160 ATCTTGGACTTGACATTGTCGATTGTGTCGCTCGA---CTCCACCTCAAGGGTGATAGTC 1216 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 1217 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq2403 Length=4098 Score = 107 bits (118), Expect = 4e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| ||||| || | ||||| | ||||| |||||||| || || || ||||| Sbjct 2171 TTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATC 2230 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || |||||||| || ||||| || || || |||||| || || Sbjct 2231 AGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 2290 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||||||||||| || || || ||||| | ||||| || || | || || ||||| Sbjct 2291 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 2350 Query 195133 ACTTGCA 195139 | |||| Sbjct 2351 ATCTGCA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109395796853612