Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2403 113 3e-20
seq88 104 2e-17
seq2035 95.1 8e-15
>seq2403
Length=4098
Score = 113 bits (124), Expect = 3e-20
Identities = 141/191 (74%), Gaps = 8/191 (4%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || || | || |||| || |||||||| || ||||| ||
Sbjct 2171 TTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATC 2230
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| |||||| ||||| || |
Sbjct 2231 AGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT--T 2286
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || ||| || |||| ||| ||||| || |||||||| ||||||||
Sbjct 2287 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 2346
Query 34970 AAAGATCTGCA 34980
||||||||||
Sbjct 2347 GAAGATCTGCA 2357
>seq88
Length=36327
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||||||||| ||||| || | | || |||| ||
Sbjct 33095 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCG 33036
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || |||||||| || || || |||||||| | || | |||||||| ||
Sbjct 33035 AGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGG 32976
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| || || | |||| || | |||||| || | || ||||| |||
Sbjct 32975 ATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTT 32916
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| || |||||||| || |||||||||
Sbjct 32915 CCCGTCAGGGTCTTCACGAAAATCTGCATA 32886
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
|||||||| ||||| || || || |||||||| | || |||| || || ||||| ||
Sbjct 32855 GTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGTTTGCCC 32796
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || || |||||||| | || | ||||||||||| |||||| ||
Sbjct 32795 GCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTA 32736
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | || | ||| || |||| ||| || || || || || || |||
Sbjct 32735 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAGGGTC 32676
Query 34965 TTCACAAAGATCTGCATA 34982
|| || ||||| ||||||
Sbjct 32675 TTGACGAAGATTTGCATA 32658
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || || ||||| ||||| ||||| || || | || |||| |||
Sbjct 33323 ACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCATCCTCC 33264
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || || || || | || ||||||||| | || | |||||||| || |
Sbjct 33263 AACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGA 33204
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || | || || || | || || || ||
Sbjct 33203 ATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAATCGTCTTC 33144
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||||| ||||| || |||||||||||
Sbjct 33143 CCCGTGAGGGTCTTGACGAAGATCTGCAT 33115
>seq2035
Length=5329
Score = 95.1 bits (104), Expect = 8e-15
Identities = 143/201 (71%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||| || || || ||||| ||| | | |||| || ||||| || ||
Sbjct 1052 GTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCA 1111
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || || |||||||| | || | ||||||||||| ||||| |||
Sbjct 1112 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1171
Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| || | | ||| || || | ||| || || || ||||||||
Sbjct 1172 AC--AT--TGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 1227
Query 34961 AGTCTTCACAAAGATCTGCAT 34981
|||||||| |||||||||||
Sbjct 1228 GGTCTTCACGAAGATCTGCAT 1248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324609718735008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |