Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq353 118 9e-22 >seq353 Length=20357 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 || || || || ||||| | || ||||| |||| |||| |||||||| | |||||| Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886 ||||| ||||| |||| | |||| | | || || | || || ||||| ||| Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930 Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946 | ||||| ||| || || | ||||||||||||||| || || || || ||||||||||| Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870 Query 29947 CCCGACCTCTGGTAGAGCTGACA 29969 | ||| | ||||||||||| || Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847 Score = 116 bits (128), Expect = 3e-21 Identities = 257/380 (68%), Gaps = 8/380 (2%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || ||||| | || ||| ||||||||||||| | | || Sbjct 5730 TGTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGA 5671 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 ||| | ||| |||||| ||| | || |||| | |||||| || |||| Sbjct 5670 GGCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCC 5611 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 || || |||||||| | | ||||| ||||| || ||||| |||| |||||||| Sbjct 5610 CCTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGA 5551 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAA 30246 |||||||||| || |||||||| ||||| | | | | || | ||| |||||| | Sbjct 5550 ACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGG 5492 Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA-GCTCTTTG-- 30303 || || | || |||||| ||||||||||||| || || | ||||| | | | || Sbjct 5491 AACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGTGAGGAGAGGGTGTGTGAC 5432 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 ||| ||| || || |||||| || ||||| | | ||||| || ||||| Sbjct 5431 GAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACG 5375 Query 30364 CTCTTGGTCGTGAGGAGGGG 30383 | ||||| ||||||||||| Sbjct 5374 CGTTTGGTGGTGAGGAGGGG 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408587540557028