Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq353 118 9e-22
>seq353
Length=20357
Score = 118 bits (130), Expect = 9e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826
|| || || || ||||| | || ||||| |||| |||| |||||||| | ||||||
Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990
Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886
||||| ||||| |||| | |||| | | || || | || || ||||| |||
Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930
Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946
| ||||| ||| || || | ||||||||||||||| || || || || |||||||||||
Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870
Query 29947 CCCGACCTCTGGTAGAGCTGACA 29969
| ||| | ||||||||||| ||
Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847
Score = 116 bits (128), Expect = 3e-21
Identities = 257/380 (68%), Gaps = 8/380 (2%)
Strand=Plus/Minus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
||||||| || || || ||||| | || ||| ||||||||||||| | | ||
Sbjct 5730 TGTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGA 5671
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127
||| | ||| |||||| ||| | || |||| | |||||| || ||||
Sbjct 5670 GGCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCC 5611
Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187
|| || |||||||| | | ||||| ||||| || ||||| |||| ||||||||
Sbjct 5610 CCTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGA 5551
Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAA 30246
|||||||||| || |||||||| ||||| | | | | || | ||| |||||| |
Sbjct 5550 ACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGG 5492
Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA-GCTCTTTG-- 30303
|| || | || |||||| ||||||||||||| || || | ||||| | | | ||
Sbjct 5491 AACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGTGAGGAGAGGGTGTGTGAC 5432
Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363
||| ||| || || |||||| || ||||| | | ||||| || |||||
Sbjct 5431 GAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACG 5375
Query 30364 CTCTTGGTCGTGAGGAGGGG 30383
| ||||| |||||||||||
Sbjct 5374 CGTTTGGTGGTGAGGAGGGG 5355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408587540557028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |