Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq27 86.0 8e-12 >seq27 Length=52641 Score = 86.0 bits (94), Expect = 8e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 197437 CCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCC 197496 ||||| | ||| | || |||||| |||||||||||||||| ||| | | ||||| || Sbjct 5650 CCGTTTAGGTAGAGCAGGTCAAAGGCAAAGACGCACACCTTGACCTTAACATCTTCCACC 5709 Query 197497 TTGACATCTTTACGTTTTCTG-GTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTC 197555 |||||||| || | | ||| | ||| |||| || ||||| |||| || |||| || Sbjct 5710 TTGACATCCTT-CTTCTTCCGTGTCATGAGCTGCTGGAAGGGCAGGACCTTTTTCTCCTG 5768 Query 197556 AACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGTTGATCGA 197615 || ||||| || || | || ||||||| ||| ||| |||| |||| | | Sbjct 5769 GACATCCCACGCCACAGATTCGCAATCCAAGACAAAACTCTTGGTGTCCTCCTTGACCCA 5828 Query 197616 TTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTT 197669 ||||||| | || | ||||||||| |||| || || ||| ||||| Sbjct 5829 GGTGGGAAGCTTGGCGAGAACGTCGGGGTATTTCTTGGACAGATCTTCCGAGTT 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676678540751680