Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4893 109 4e-19
seq88 109 4e-19
seq113 86.0 5e-12
seq2035 84.2 2e-11
>seq4893
Length=312
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|| |||||| || | ||||||||| || || || ||||| || ||| | || ||||
Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
||||||||||| || || || ||||| ||||| || |||| |||| ||||||||||||
Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| || || | | | ||||| ||||||||||| |||||||||
Sbjct 180 CTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGT 121
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || | || ||||| || || |||||
Sbjct 120 CTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
>seq88
Length=36327
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
||||| | ||||| || || |||||||| || ||||| ||||| || || | | | |||
Sbjct 33104 AGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGA 33045
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | ||||| |||||||| ||||| ||||| || || | || | ||||||
Sbjct 33044 CCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 32985
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || ||| | | | ||||||| ||| ||||||| ||
Sbjct 32984 TTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTG 32925
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || |||||||||| || || || |||||||||||
Sbjct 32924 ATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
|||||| | || |||| |||||| || || || ||||| || || || ||||| || ||
Sbjct 33342 GCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGA 33283
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | ||| | || ||||||||||| || || || |||| ||||| || || | |||
Sbjct 33282 CAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGG 33223
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| |||||||| || ||||||| || || | | | || || | |||||
Sbjct 33222 GATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCAC 33163
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| |||||||| || ||||| | || || || || ||||||||
Sbjct 33162 TTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| ||||| ||||| || || || | | | ||| | || ||||||||||| ||||||||
Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||||| ||||| || || | || | |||||||||||| ||||||
Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTT 32515
>seq113
Length=33764
Score = 86.0 bits (94), Expect = 5e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153
|| || | || ||| |||| | ||| | |||| | ||||| || |||||||||| |
Sbjct 33253 TGCGCGACCCGGTCGCCCTCCTGCACCTCGTAGTCGGCGTCGGCGTGGTTGAACAGCAGC 33194
Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213
||| ||| || | ||| || | ||||| || || || ||| |||||||||||||
Sbjct 33193 ACTTTGACGGGGCCGCGGTAGTCGGCGTCGATGACTCCCGCGCCCGTGTCGATGAAGTGC 33134
Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGT 9250
||| | || || || |||||||| ||||| || ||||
Sbjct 33133 TTGGCTGCGAGGCCGGAGCGGGGGGCGATGCGGCCGT 33097
>seq2035
Length=5329
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || || ||||||||||| || || | | | || || | ||||
Sbjct 1046 TGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGC 1105
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| ||||| ||||| || || | ||| | |||||||||||| |||||
Sbjct 1106 TTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 1165
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | || || ||||||||| | || || || || |||||
Sbjct 1166 GACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 1225
Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769
| || || || || |||||||| ||
Sbjct 1226 AGGGTCTTCACGAAGATCTGCATGGT 1251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380909576801628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |