Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4893 109 4e-19 seq88 109 4e-19 seq113 86.0 5e-12 seq2035 84.2 2e-11 >seq4893 Length=312 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || |||||| || | ||||||||| || || || ||||| || ||| | || |||| Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| || || || ||||| ||||| || |||| |||| |||||||||||| Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || || | | | ||||| ||||||||||| ||||||||| Sbjct 180 CTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGT 121 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | || ||||| || || ||||| Sbjct 120 CTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq88 Length=36327 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| || || |||||||| || ||||| ||||| || || | | | ||| Sbjct 33104 AGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGA 33045 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| |||||||| ||||| ||||| || || | || | |||||| Sbjct 33044 CCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 32985 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | ||||||| ||| ||||||| || Sbjct 32984 TTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTG 32925 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||| || || || ||||||||||| Sbjct 32924 ATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| |||||| || || || ||||| || || || ||||| || || Sbjct 33342 GCCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGA 33283 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || ||||||||||| || || || |||| ||||| || || | ||| Sbjct 33282 CAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGG 33223 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||| || ||||||| || || | | | || || | ||||| Sbjct 33222 GATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCAC 33163 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||| || ||||| | || || || || |||||||| Sbjct 33162 TTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||| || || || | | | ||| | || ||||||||||| |||||||| Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||| ||||| || || | || | |||||||||||| |||||| Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTT 32515 >seq113 Length=33764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 || || | || ||| |||| | ||| | |||| | ||||| || |||||||||| | Sbjct 33253 TGCGCGACCCGGTCGCCCTCCTGCACCTCGTAGTCGGCGTCGGCGTGGTTGAACAGCAGC 33194 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 ||| ||| || | ||| || | ||||| || || || ||| ||||||||||||| Sbjct 33193 ACTTTGACGGGGCCGCGGTAGTCGGCGTCGATGACTCCCGCGCCCGTGTCGATGAAGTGC 33134 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGT 9250 ||| | || || || |||||||| ||||| || |||| Sbjct 33133 TTGGCTGCGAGGCCGGAGCGGGGGGCGATGCGGCCGT 33097 >seq2035 Length=5329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || ||||||||||| || || | | | || || | |||| Sbjct 1046 TGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGC 1105 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| ||||| ||||| || || | ||| | |||||||||||| ||||| Sbjct 1106 TTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 1165 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || ||||||||| | || || || || ||||| Sbjct 1166 GACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 1225 Query 48744 AAAGTTTTTACAAAAATCTGCATCGT 48769 | || || || || |||||||| || Sbjct 1226 AGGGTCTTCACGAAGATCTGCATGGT 1251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380909576801628