Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq979 277 3e-69 seq1383 251 1e-61 >seq979 Length=11123 Score = 277 bits (306), Expect = 3e-69 Identities = 843/1282 (66%), Gaps = 53/1282 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| || ||||| ||||||||||| ||||| ||| || || ||| | |||||||| Sbjct 4640 GTCAGAGCCGCGTGATAGATGGTCTCGAAGATTTGCTTATTCAG-CTCACGAGCCTCGGG 4582 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || ||| | | || | |||||||| ||||| || |||| || Sbjct 4581 AGACTCGAAAGGCATGCGAAGCGCCAGGAAAGCATCGGCCAGGCCCTGGACACCGACGCC 4522 Query 221536 GATGGGCCTGTGTCTC------CTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTT 221589 |||||| | ||| | | |||||| |||| || |||| |||| || ||| Sbjct 4521 GATGGGGCGGTGGCGCATGTTGCTGTTGTAAGC-----CTCCTGGACCGGG-TAGTGGTT 4468 Query 221590 GACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTG 221649 ||||||||| | ||||| ||||| || | ||||| | || ||| ||||||||| Sbjct 4467 GACGTCGATGATCTTGTTCAGGTTGCGAACCACGACTTGGGCGACTTCGTGCAGCTTCTG 4408 Query 221650 G---TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGC 221706 | | || || |||| || | | |||| || || | | ||||| Sbjct 4407 GAAGTCATAGA-CACC--CTTGTTGTAGTCGACGA--------ACTGAGGA----AGGGC 4363 Query 221707 AACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCT 221764 | ||||||||| || ||||| |||||||| | || | |||| |||||||| Sbjct 4362 CAGCGAGGCCAGGTTGCAGACGGCAACCTCGTCG--GGTGCCGAGTACTCGATGATCTCA 4305 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || |||||| || |||||| || |||| || || || |||||| ||| || Sbjct 4304 GTGCACAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTG-CA 4246 Query 221825 GCG-TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTC 221883 | | |||||||||||||| ||||| ||| ||||| ||||||| | || || | Sbjct 4245 GTGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATA 4186 Query 221884 CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGT 221943 |||||| | | ||| | | ||| | ||| || || || ||| || ||| Sbjct 4185 CCAGAGCTTTTGGGCCTTGATAGTCTTAC-GACCGCGGCC--GGCCTTCTCGTACTTCTC 4129 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||| || || |||| ||||| || ||| | ||||| || ||| | ||| || Sbjct 4128 ATACAGGGCCTCGAACTCGTCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCA 4069 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||||||| |||| | ||| | | ||| | || |||||||||||| || ||||| || Sbjct 4068 CATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAG 4009 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 ||| | |||||||| | | || |||||| ||||| ||| || | || || | Sbjct 4008 GGCCAGGAAGAGATCGCGAGCACGGACTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAG 3949 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 |||||||| | ||| |||||||| ||||| || |||| ||| | || ||||| ||||| Sbjct 3948 GAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTT 3889 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAG 222243 ||||||||| || || || | | |||||||| || || | || | | Sbjct 3888 GTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGAT 3829 Query 222244 TCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG 222301 || ||||| ||||||||||| ||||| | || || | || | | || Sbjct 3828 GCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCAC---GGATGCGGTG 3772 Query 222302 GCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | | |||||| || || || || || ||||||||||| |||| ||| |||| Sbjct 3771 GATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCAAGTCTTAAGACTGTC 3712 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||||||||| || ||| ||||| | || | ||| || ||||| || | ||| | Sbjct 3711 GTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGC 3652 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | || || |||||| || || ||||| ||| ||||| ||| | | ||||| Sbjct 3651 CTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACAT 3592 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATC 222539 || | ||| ||||| | ||| | | | |||||| ||| || | | | ||| | Sbjct 3591 GAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATGCCG-ACGGCAACAC 3533 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 |||| ||||| ||| || | ||| ||| || | ||||| || ||||| || Sbjct 3532 GCATGATCATGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCT--TCAGGAGGTATGA 3475 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 ||||| |||||||| |||||||| | | || ||||| | | | | || | ||| Sbjct 3474 GCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCCCGGTCATAGACAATGGC 3415 Query 222658 GGCGTCCAGCTCCGACTTGTGC 222679 | ||| |||||| ||||||| Sbjct 3414 CGAGTCGAGCTCCTCCTTGTGC 3393 >seq1383 Length=8527 Score = 251 bits (278), Expect = 1e-61 Identities = 568/853 (67%), Gaps = 16/853 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||||||| |||||||| || Sbjct 6913 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACCTC 6972 Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593 |||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 6973 TCCAAGGACCTCCACGACTGGAACAACAAGATCAACGACGATGAGAAGTACTTCATCTCT 7032 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || |||||||| ||| |||| | Sbjct 7033 CACATCCTCGCTTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTGGTCGAGCGC 7092 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 7093 TTCAGCGGCGAGGTCCAGGTCCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 7152 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||||||| || || ||| | || ||||| | || ||| Sbjct 7153 GAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCTGCC 7212 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || | | ||||| ||||||||| ||| ||| |||| | |||||| Sbjct 7213 CAGCGCACGCACCTGTTCAATGCCATCGACACCATCCCCGCCATCCGCAAGAAGGCCGAC 7272 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| || |||||||| ||||| | || |||| | |||| ||||| || ||| Sbjct 7273 TGGGCCCTGCGGTGGATCACTGACCAGAAGTCGACCTTTGCCCAGCGCCTGGTCGCGTTT 7332 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 |||||||| ||||| ||||| ||||||||| | ||||| ||||||||||||||||| || Sbjct 7333 GCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAG 7392 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| ||||||||||||||| | |||||||||||| Sbjct 7393 CGCGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTC 7452 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCTCAAG 26071 |||| || || ||||||||||| | | || ||| || |||| || |||| Sbjct 7453 CACACCGACTTCGCCTGCCTGCTGTTCTCG---CAC---CTTAACAACCGCCCCAGCAAG 7506 Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | | | |||||| || || ||| |||||| ||||||| | Sbjct 7507 CAGGTCATTGAGGACATCATCGTCGACGCCGTGCGCATCGAGCAGGAGTTCCTCACCGAG 7566 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| || || |||| || |||||||||| Sbjct 7567 GCCCTGCCGTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTC 7626 Query 26191 GTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 || ||||||| ||||| || ||| || || || | | ||| | || | |||| Sbjct 7627 GTCGCCGACCGCCTGCTCGTCGCC--CTCGGCAACGAGAAGGTGTACCGGTCGACAAACC 7684 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || | | || |||||||||||||| || ||| | | Sbjct 7685 CCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCG 7744 Query 26309 TCGGCGACTATCA 26321 ||||||| || || Sbjct 7745 TCGGCGAGTACCA 7757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928774718659840