Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq748 113 1e-19 seq1557 93.3 1e-13 >seq748 Length=13504 Score = 113 bits (124), Expect = 1e-19 Identities = 200/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| || | ||| || ||||| ||||| || | Sbjct 10231 CTTGACAAGACGACGCTGGATGTAACCTGTCTCGGCTGTCTTGACAGCGGTATCGATCAA 10172 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | ||||| |||| || |||||||| | |||| || ||| | || | | | Sbjct 10171 ACCTTCGCGACCGGCCATGGCGTGGAAGAAGAACTCTGAAGG-CGTCAAGCCACGGAGAT 10113 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| | || ||||| || || |||||||| || | ||| |||||| || || |||| Sbjct 10112 ATGAGTTTTCGACGAAGCCTCGGGCCTCGGGAGAGTAGTCATCCTTGGTGAAATGGGGCA 10053 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 |||| | || || | ||| | || ||||||||||| || || |||||||||| | Sbjct 10052 GGGTTCGGTACTTGAACCCGAACGGAATACGCTTTCCTTCGACAATCTGCTGTCCGACCA 9993 Query 302822 ACGAAATCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 | | |||| ||||| || || ||| | | |||||||| |||| Sbjct 9992 AGGCCGTCATTTGCGAGATGTT--AATGGCGGAACCCTTGGAACCAG 9948 Score = 86.0 bits (94), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||||||||| |||| ||||| |||||||| ||||| || Sbjct 11025 AGAATTTCCTTGAGACGGGGAACACCCAGGGTGACGTT---CTTGGACGACACACCGGCG 10969 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | || || | ||||| ||||| || || || | | Sbjct 10968 AAATGGAAGGTGTTCAGTGTCATCTGCGTCGCCGGCTCTCCAATGGACTGAGCAGCCAAC 10909 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGAC 301965 | |||||||||||| || || | || || ||| Sbjct 10908 ACACCAACCATTTCACCGGGGGAGACCATGGAC 10876 >seq1557 Length=7509 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 251430 ATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACC 251489 ||| |||| | | ||||| || | ||| | || || |||| ||||| | || || Sbjct 3804 ATGCACGCGGAACGCATCCGACACTTCAAACAGGCGCTCCTTCAAGAAGCTGGCCGCGCC 3745 Query 251490 GTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCT 251549 ||| | |||||| |||||||| ||||||||||||||||| ||||||||||| | || | Sbjct 3744 GTGCGCAATCATGCAATCACGTTCCATTTCACCGAAACGCAGACCACCATCCCTTGCACG 3685 Query 251550 ACCCTCGGCAGGCTGACGAGT 251570 |||||| | ||||| || || Sbjct 3684 ACCCTCCACCGGCTGGCGCGT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471703775146132