Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq979 132 4e-26 seq88 98.7 9e-16 seq2035 96.9 3e-15 >seq979 Length=11123 Score = 132 bits (146), Expect = 4e-26 Identities = 964/1531 (63%), Gaps = 70/1531 (5%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| ||||| || ||||| ||| |||||| ||| | ||||| || Sbjct 4925 ACCTGGAACTCACCAGCCAAGACACGACGCTGGTAGATGTTGGACGTGTAGGGCTCGAAG 4866 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 |||||||||| ||||| || || | ||| | |||||||||||| ||| | | | Sbjct 4865 CATTCGTTGTTGCCCAGGATTTGCGACGTCGAGGCGGTCGGCATGGGCGCGAGGAGCAAG 4806 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||| | ||| || |||||| ||||||||| ||||||||| | || Sbjct 4805 CTGTTCCGGACACCATGCTCCTTGATCTTGGCCTTGAGCGCGTCCCAGTCCCAGAGGCCG 4746 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGGACTGCC 138743 | || | ||||||||| |||||||| | || ||| | || |||| | || Sbjct 4745 GTCGGCGTGACGTTCCACATGTCGTACTGGAGGATACCCTGGGATAC---CGGGGAT-CC 4690 Query 138744 TTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCG---AGCGC 138800 ||| || | |||| || ||| | |||| || || || || || || Sbjct 4689 TTCATAGGTCGAGTATGTGCCTTGCTCCTTGGCCAGATC---GCACGAGGCGGTCAGAGC 4633 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | || || || ||| || |||| ||| ||| || ||||||| |||| | Sbjct 4632 CGCGTGATAGATGGTCTCGAAGATTTGCTTATTCAGCTCACGAGCCTCGGGAGACTCGAA 4573 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 |||||||| ||| | ||| || |||||||| || || || || || |||| ||||| Sbjct 4572 AGGCATGCGAAGCGCCAGGAAAGCATCGGCCAGGCCCTGGACACCGACGCCGATGGGGCG 4513 Query 138921 ATGGCGCAGATTTGACGCTTTT----GCGGCTTCGATAGGATAATAGTTTACATCGATGA 138976 ||||||| || ||| || || | | || || || | ||| || ||||||| Sbjct 4512 GTGGCGCA----TGTTGCTGTTGTAAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATGA 4457 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTAT 139035 | ||||| | || || || || | ||| | || | | | | | | | || || || Sbjct 4456 TCTTGTTCAGGTTGCGAACCACGA-CTTGGGCGACTTCGTGCAGCTTCTGGAAGTCATAG 4398 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 ||| ||||| |||||||| | || || | | | |||||| | |||| Sbjct 4397 ACACCCTTGTTGTAGTCGACGAACT-GAGGAA-----GGGC---CAGCGAGGCCAGGTTG 4347 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || |||||||| | ||| |||| || || | |||| || | Sbjct 4346 CAGACGGCAACCTCGTCGGGTGCCGAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTG 4287 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||| || || | || | || ||||| || ||||| || ||| ||||| ||||| Sbjct 4286 CGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATG 4227 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG---CT 139272 | || |||| || || || | ||| | ||| | | || | | | || Sbjct 4226 AAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCAT--ACCAGAGCTTTTGGGCCT 4169 Query 139273 TG-TA-TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-T 139329 || || | | ||| || | || | ||||||||| || || || | ||||| | Sbjct 4168 TGATAGTCTTACGACCG---CGGCCGGCCTTCTCGTACTTCTCATACAGGGCCTCGAACT 4112 Query 139330 CGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACG 139389 || ||||| ||| || | ||| || | |||| || || ||||| || | ||| | Sbjct 4111 CG-TCACCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCT 4053 Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 |||||| || ||| ||| ||||||| || || |||||||| | || | | | |||| Sbjct 4052 CCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAGAGATCG 3993 Query 139450 CGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAA 139504 || || |||| | | ||| | ||||| | || ||||| ||||| | Sbjct 3992 CGAGCACGGACTTCCTCCTTGCCG--TGGTTCTTACG---GAGGTCGAGGAACTCAAAGA 3938 Query 139505 CGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTT 139561 |||| |||||||| || || || |||||||| | || || || |||||||||| Sbjct 3937 CGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTT 3878 Query 139562 GATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG 139621 | || |||| || | | || ||||| || || | ||| || | || | | | Sbjct 3877 GGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAAG 3818 Query 139622 TTCCGTTGGTGCTACGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCC 139679 | |||||||||| ||| | || | | || |||| | || | |||| ||| Sbjct 3817 TGCCGTTGGTGC--CGGCGATGTATGATCCAGTCGCACGGATGCGGTGGATGTTGAGGCC 3760 Query 139680 GATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA-TGTCTCGTATATACCTC 139738 ||| ||||| | | ||||| || | ||||| | ||| | ||||| || || Sbjct 3759 GATGCCGCCTGCCATCTTGGAAATCATGGCGCAA-GTCTTAAGACTGTCGTAGATGCCCT 3701 Query 139739 TTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGC 139798 |||||||| |||| ||| |||||| ||||| || ||||| || | | || | Sbjct 3700 CGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCTGGGCCTGAGGGGTAC 3641 Query 139799 CGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACG 139858 |||| || || || || || || ||||| | | || ||||| | | ||| | Sbjct 3640 CGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGAACTTGTTGGACATGAGGTTGTATG 3581 Query 139859 TTTCGATG--GCGCT-CACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 | |||||| ||||| ||| | || ||| ||| ||||| | || ||||| | || Sbjct 3580 TCTCGATGACGCGCTCCACGTTGTC---TCCCCAGATGCCGACGGCAACACGCATGATCA 3524 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGG 139975 | || || || ||| | | | ||| | || || || || | ||| |||| Sbjct 3523 TGTGCTGTGGGCGCTCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGG 3464 Query 139976 TCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||| ||||||||||| |||||||| || Sbjct 3463 TCTTGAAGCCAAAGTACTGGTAGTTGAAGTC 3433 >seq88 Length=36327 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || ||||| ||| | | Sbjct 33115 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATTACTCTGGAAGTGGAATCTTCG 33174 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| || || || || || || || || || || Sbjct 33175 GATACGATCGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 33234 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 || ||||||||||| || || || ||| |||||||| ||| || | |||| || || | Sbjct 33235 CAGCGTTTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCG-GACTC-TGTCCGACTACA 33292 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || ||||| || || ||||||||| |||| | || || ||| Sbjct 33293 ACATCCAGAAGGAGAGTACTCTCCACTTGGTGCTGCGTCTCCGTGGCGGC 33342 >seq2035 Length=5329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || ||||| || || || || || | Sbjct 1251 ACCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 1192 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||||| | || | || || |||||||| ||||| || || || || || || Sbjct 1191 AGCGACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 1132 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||||| || || ||||| |||||| || | | | || ||||| Sbjct 1131 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCAGGACCCTCTCGGATTAC 1072 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || || ||||| || || ||| | ||| | || |||| || || || Sbjct 1071 AATATCCAGAAGGAGAGCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGGTGG 1019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863655226080