Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq88 100 2e-16 >seq88 Length=36327 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||| ||| || || || || ||||||| || |||||| | Sbjct 32873 CGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCA 32814 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||||||||| ||| | |||| | ||||| || || ||||||||||| ||| Sbjct 32813 TCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTG 32754 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| ||| || || || || || ||| Sbjct 32753 TCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATA 32694 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 32693 GTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || || || || || || ||||| || || | | || ||| Sbjct 33330 ACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACC 33271 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || ||||| || | ||||| | ||||| || || || |||||||| || Sbjct 33270 ATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTT 33211 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| |||| ||||| | || | || || ||| ||| ||||| ||||| | Sbjct 33210 ATCCTG-AATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAA 33152 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || || || |||||||| Sbjct 33151 TCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385190861831076