Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq353 125 8e-24 >seq353 Length=20357 Score = 125 bits (138), Expect = 8e-24 Identities = 270/402 (67%), Gaps = 10/402 (2%) Strand=Plus/Minus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 ||||| |||||| | |||||||| ||||| || ||||| ||||| ||| || ||| Sbjct 5749 ACGTAGAACTGGGCGAACATGTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGG 5690 Query 147166 TTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACC 147225 |||||||| || ||| || || | | |||||| || | | | | | Sbjct 5689 TTCCAGGCGCTGAGCACGAGGCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATG 5630 Query 147226 CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCC 147285 | | ||||||||| || |||||||| ||||| ||| ||| |||||||||| || Sbjct 5629 CGCGCCAGCTGGTCGACCCCCTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCG 5570 Query 147286 CCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAG 147345 || ||||||| ||||||||| |||||||| || |||||||| || || | ||| | Sbjct 5569 CCGAAGTGCCGCCACTGGAACCCGTACACGGGACCCAGGTCCCCC-----TCCGCGCGGG 5515 Query 147346 AAGCCCGCCCG--CTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTC 147400 | | | | ||| |||| || |||||| | || |||| | |||||||||| || | Sbjct 5514 AGGTCAGGCCGAGCTTGTCAAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGC 5455 Query 147401 CCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCA 147460 | | | |||||| | || ||| ||| |||||||||||| ||||| | | Sbjct 5454 CTTGTGAGGAGAGGGTGTGTGACGAGGTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGA 5395 Query 147461 AAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 || | | ||||| | |||||||| || ||||||| Sbjct 5394 TCACGGCTTTGGTGAAGACGCGTTTGGTGGTGAGGAGGGGGA 5353 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||||| ||||||||||| |||| | ||| | ||| ||| Sbjct 6007 TCCACGTGGTTCAGGTACACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACC 5948 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||| || |||||| |||| ||||| || ||||||| ||||||||| |||||||| || Sbjct 5947 AGGTCGCACACGTGCGCCAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGC 5888 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 || ||||| |||||||| | ||| | ||||| |||||||| Sbjct 5887 ACGCCCAGCCCCATGTCGCACGAGCGTTGGTAGAGCTGGCA 5847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583443975830400