Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1383 255 8e-62 seq979 152 7e-31 seq1557 113 6e-19 seq2787 105 1e-16 seq471 93.3 6e-13 >seq1383 Length=8527 Score = 255 bits (282), Expect = 8e-62 Identities = 371/511 (73%), Gaps = 20/511 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||||||||||||| | |||| Sbjct 6912 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACC 6970 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| | | | |||||| ||| | |||||| Sbjct 6971 TCTCCAAGGACCTCCACGACTGGAACAACAAGATCAACGACGATGAGAAGTACTTCATCT 7030 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| ||||||| ||| |||||||| || |||||||| ||||||||||| || Sbjct 7031 CTCACATCCTCGC-TTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTGGTCGAG 7089 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 7090 CGCTTCAGCGGCGAGGTCCAGGTCCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 7149 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| |||||||| || || || ||||||||| ||||||| || Sbjct 7150 ATGGAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCT 7209 Query 1456072 GTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | || | || ||||| || ||||||||||| | || | | | || ||||| Sbjct 7210 GCCCAG-CGCACGCACCTGTTCAATGCCATCGACACCATCCCCGCCATCCGCAAGAAGGC 7268 Query 1456131 CGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 ||||||||| || |||||||| || || || ||||| ||||||| |||| || Sbjct 7269 CGACTGGGCCCTGCGGTGGATCACTGACCAGAAG----TCGAC-CTTTGCCCAGCGCCTG 7323 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTTT 1456244 |||| ||||| || |||||||| ||||| ||| ||| || || | | ||||||| | Sbjct 7324 GTCGCGTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTCT 7381 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||||||||||||||| || Sbjct 7382 GGCTCAAGAAGCGCGGCCTCATGCCCGGCCT 7412 Score = 174 bits (192), Expect = 2e-37 Identities = 197/259 (76%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||||||| ||||| |||||| | ||||| ||| |||| | |||||| || Sbjct 7522 ATCATCGTCGACGCCGTGCGCATCGAGCAGGAGTTCCTCACCGAGGCCCTGCCGTGCGCC 7581 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | || ||| |||||||||| | || ||||||||||||| Sbjct 7582 CTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTCGTCGCCGACCGCC 7639 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| || |||||| | |||||| |||||| || | ||||| ||| | ||| Sbjct 7640 TGCTCGTCGCCCTCGGCAAC-GAGAAGGTGTACCGGTCGACAAACCCCTTCGACTTCATG 7698 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| ||||| ||||||||| Sbjct 7699 GAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAG 7758 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||||||||||| |||| Sbjct 7759 AAGGCCGGCGTCATGGCCA 7777 >seq979 Length=11123 Score = 152 bits (168), Expect = 7e-31 Identities = 339/505 (67%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||||| |||||| | ||||| | | | ||| ||||| |||| |||||| Sbjct 3393 GCACAAGGAGGAGCTCGACTCGGCCATTGTCTATGACCGGGACTTCAACTACCAGTACTT 3452 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGC----GCGATATTGTCGTCG 259796 ||| | |||| || || || ||||| | ||| | || | ||||||| Sbjct 3453 TGGCTTCAAGACCCTGGAGCGCTCATACCTC-CTGAAGCTCAACGGCAAGATTGTCG--- 3508 Query 259797 AGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCG 259856 |||| || ||| | ||| |||||||||| ||| | ||| | |||| || | Sbjct 3509 AGCGCCCACAGCACATGATCATGCGTGTTGCCGTCGGCA--TCTGGG------GA----G 3556 Query 259857 ACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCT 259916 |||| | |||||| ||| ||| || ||| | |||||| | |||| ||||| Sbjct 3557 ACAACG---TGGAGCGCGTCATCGAGACATACAACCTCATGTCCAACAAGTTCTTCACAC 3613 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || | ||||| ||||| || ||||| || || | | ||| ||| || ||||| | Sbjct 3614 ATGCCTCCCCCACCCTCTTCAACGCCGGTACCCCTCAGGCCCAGCTTTCCTCTTGCTTCC 3673 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 || | |||||||||| || |||||||||||||| |||| || ||| ||||| Sbjct 3674 TGGTCGACATGAAGGATGACAGCATCGAGGGCATCTACGACAGTCTTAAGACTTGCGCCA 3733 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | || |||||| ||| ||||||||||| | | ||| | || || | || Sbjct 3734 TGATTTCCAAGATGGCAGGCGGCATCGGCCTCAACATCCACCGCATCCGTGCGACTGGAT 3793 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 | ||| | || |||||||||||| ||||| ||| | | |||||||| || || || | Sbjct 3794 CATACATCGCCGGCACCAACGGCACTTCCAATGGCATCATCCCCATGCTCCGTGTCTTCA 3853 Query 260157 ACGACACGGCGCGCTACGTCGACCA 260181 || |||| || |||||||| ||||| Sbjct 3854 ACAACACCGCCCGCTACGTTGACCA 3878 Score = 127 bits (140), Expect = 3e-23 Identities = 336/514 (65%), Gaps = 20/514 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||||||| |||||| || || |||||||||||| || Sbjct 3880 GGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTC 3939 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || |||||| |||||||||||||||| ||| ||| || |||| Sbjct 3940 TTTGAGTTCCTCGACCTCCGTAAGAACCACGGCAAGGA----GGAAGTCCGTGCTCGCG- 3994 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 ||||||| | ||| |||| |||||| || ||| || | | || | | Sbjct 3995 -ATCTCTTCCTGGCCCTCTGGATTCCCGACCTCTTCATGAAGCGTGTCGAGAAGAACGGA 4053 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | || | ||||| |||| |||||||| ||| |||||||| | | Sbjct 4054 GAGTGGACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGATTGCTATGGTGACGAG 4113 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGCCC 262084 || || ||||| |||||| || ||| || | || Sbjct 4114 TTCGAGGCCCTGTATGAGAAGTACGAGAAGGCCGGCCGCGGTCGTAAGACTATCAAGGCC 4173 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 | | || |||||| ||||| ||| ||| || | ||||||||||| |||| |||| Sbjct 4174 ---CAAAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATG 4230 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGA 262203 |||||||||| | ||||| | ||||||||| ||||||| ||||||| | ||| Sbjct 4231 CTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCCGCAG- 4289 Query 262204 GGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAA 262263 ||||||||||||| |||||| || ||| ||| | ||| ||||| || ||||| Sbjct 4290 CTCCAACCTGTGCACTGAGATCATCGAGTACTCGGCACCCGACGAGGTTGCCGTCTGCAA 4349 Query 262264 CCT---CTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 ||| |||| ||||||| || |||| ||| Sbjct 4350 CCTGGCCTCG---CTGGCCCTTCCTCAGTTCGTC 4380 Score = 118 bits (130), Expect = 2e-20 Identities = 356/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 262872 CGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTC 262931 ||||| ||||||||||||||| || ||| | | ||||||| | || ||| Sbjct 4746 CGGCCTCTGGGACTGGGACGCGCTCAAGGCCAAGATCAAGGAGCATGGTGTCCGGAACAG 4805 Query 262932 GTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGC 262991 |||||| | |||| |||||| || ||| |||||||||| ||||||||||||| ||| Sbjct 4806 CTTGCTCCTCGCGCCCATGCCGACCGCCTCGACGTCGCAAATCCTGGGCAACAACGAATG 4865 Query 262992 GTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGT 263051 |||||| | |||| |||||||||| ||| || || | | || || || || Sbjct 4866 CTTCGAGCCCTACACGTCCAACATCTACCAGCGTCGTGTCTTGGCTGGTGAGTTCCAGGT 4925 Query 263052 GGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCG 263111 ||||||| | || | ||| | | || | || || ||| | | || | Sbjct 4926 TGTCAACCCCTGGCTCTTGAAGGACCTTGTCGACATGGGTCTCTGGTCCGACAACATGAA 4985 Query 263112 CGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 |||| |||| || | || ||| | ||| || | | | ||| | Sbjct 4986 GAACCGCATCATCGCCGATGGTGGTTCGATCCAG------AACATCCCTAACATCCCGAC 5039 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 |||| |||||||||||| ||||||||| ||||| | | | || | || | || Sbjct 5040 CGATATCAAGGCTCTCTACAAGACCGTTTGGGAAATCTCTCAGCGCACCGTCGTTCAGAT 5099 Query 263232 GGCGGCCGACCGCGCGCCCTAT-GTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 ||| ||||| || | || || | |||| ||| ||||||||||||| | || | || Sbjct 5100 GGCTGCCGATCGTG-GCGCTTTCATCGATCAGTCCCAGTCGCTCAACATTCACATGCGCG 5158 Query 263291 ACCCG---ACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 | ||| | || | || ||||| |||||| | | ||| | || |||| Sbjct 5159 AGCCGAGCATGGGCAAG---ATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCA 5215 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| || ||||||| | | || ||| | ||||||||||||| |||| Sbjct 5216 AGACGGGCATGTACTACCTCCGCACCCAGGCTGCCGCCCAGCCCATTCAATTCACTGTCG 5275 Query 263408 ATCAGG 263413 | |||| Sbjct 5276 ACCAGG 5281 >seq1557 Length=7509 Score = 113 bits (124), Expect = 6e-19 Identities = 314/464 (68%), Gaps = 32/464 (7%) Strand=Plus/Minus Query 1600295 CGGCCCTCGACCGGCTGCTTGGTGAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATC 1600354 || ||||| |||||||| || | ||||| | || || || | || ||||| ||| Sbjct 3686 CGACCCTCCACCGGCTGGCGCGTCATGATCTGCAACGGCCCACGAGCACGCGCGTGGATC 3627 Query 1600355 TTGTCGATGGCCACGTGGCGCAGGGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGC 1600413 |||||| | ||| ||||||||| |||||||||| || |||| | |||| | || Sbjct 3626 TTGTCGTCGACCATGTGGCGCAGACGCTGGTAGTAGGTGGG-GCCGAAGAAGACCTGCGA 3568 Query 1600414 CTCCATGGGCTCGCCG---GTGTGCGGGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCA 1600470 || ||| || | ||||| |||||| | | ||| ||| | || | | Sbjct 3567 GCGCA---GCTTGCGGCCCGTGTGGCCGTGGTACATGATCTCGAAACCGCGGGACTGGTA 3511 Query 1600471 TCCGTGGCGAGCCAACTCGGCGG--CGACATCG---TCGACGGTGACGCCGCCAAAGGGC 1600525 ||||| | || | || || ||||| || ||||| || ||| || ||||| Sbjct 3510 GCCGTG-CTCGCGGA---GGAGGTCCGACA-CGCTATCGACCGTCACGTCGGTGAAGGGG 3456 Query 1600526 GTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATC 1600585 || |||||||| | ||||| | || || ||||||| |||||| ||| |||| Sbjct 3455 GTCGCGTCGCCCTCCATGCCCTTGAGGGTGGACACCTTGGACAGGAGACACTCGATCAAA 3396 Query 1600586 TTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGCGTG--G 1600643 | | | |||||||| |||||||| ||||||||||||||||| | |||||||||||| | Sbjct 3395 TGGGCGATGGTCATACGCGACGGAATGGCGTGCGGGTTGATGATGATGTCGGGCGTGATG 3336 Query 1600644 CACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTG---CCCACGGTGC 1600700 | || |||| || | ||||||||||| || | | | | || || | ||| | Sbjct 3335 C-CCTCCGC----CGTGAACGGCATGTCCTC-CTGCCG-GTATG-TGACACCGATGGTAC 3284 Query 1600701 CCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGG 1600743 ||||||| |||||||| |||| | ||||| || | || |||| Sbjct 3283 CCTTTTGACCGTGGCGGGACGCAAACTTGTCACCGATCTGCGGG 3240 >seq2787 Length=2954 Score = 105 bits (116), Expect = 1e-16 Identities = 235/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 2133382 TGGCGCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGC 2133441 ||||||||||| | |||| | ||| |||| | ||| |||||||||| | | Sbjct 1432 TGGCGCGCATGAAGGGCGCCGTCCGCACCCTGCTCGAGTGCGTGGGCGAGGACCCGGACC 1373 Query 2133442 GCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCG 2133501 |||||||| | |||| || || ||| |||||||| ||| | | ||| | Sbjct 1372 GCGAGGGCGTGCTGGCGACCCCGGACCGCTACGCCAAGGCGATGCTCTACTTCACCAAGG 1313 Query 2133502 GCCATCGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACG 2133561 || | | || | || |||| ||| ||||||| |||| | |||| ||| Sbjct 1312 GCTACCAGGAGAACGTGCGCGACATCGTGAACGGCGCCATCTTCCAGGAGGGCCACAACG 1253 Query 2133562 AGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCT 2133621 ||||||| | || || || || | ||| ||||||||||||||||||| |||||| Sbjct 1252 AGATGGTCATCGTCAAGGACATCGAGGTGTTCAGCATGTGCGAGCACCACCTGGTGCCCT 1193 Query 2133622 TTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAA---GATCATCGGTCTGAGCA 2133678 | | ||||||| ||| | |||||| | ||||| |||| ||||||| | || Sbjct 1192 TCACCGGCAAGATGCACATCGGCTACAT-CCCGC--GCAACGCCGTCATCGGCATCTCCA 1136 Query 2133679 AGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAG 2133728 || | |||||||||| ||| |||||| || |||| | || || |||||| Sbjct 1135 AGCTGCCGCGCATCGCCGAGATGTTTGCCCGCCGCCTGCAGGTCCAGGAG 1086 >seq471 Length=17879 Score = 93.3 bits (102), Expect = 6e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 ||||||||||| || || ||| || | |||||||| | | ||| |||||| || Sbjct 5008 CGCAGGATGGCGCAGCGCGACTGGAGCGGCTCGATGATCTTGTTGGACTGGTTGCACGCA 4949 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| || || || || |||| | | ||||| || |||||||||||| || || Sbjct 4948 AAGGCGAAGCGTGTTGTGTTGGAGTAGATCTCCATCGTTCGCCGGAGGGCCTGCTGCGCG 4889 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 ||| || | || |||||| ||||||||||| | |||||||| ||||| || || || Sbjct 4888 CCCGAGGTCATGCTGTCGGCTTCGTCGAGGATCACAATCTTGTGTCGCCCCTGAGGGAG 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177229016705832