Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4893 145 7e-30 seq88 131 2e-25 seq2035 122 8e-23 seq2403 102 7e-17 >seq4893 Length=312 Score = 145 bits (160), Expect = 7e-30 Identities = 166/219 (76%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||||| || ||||| |||||||| || |||||||| ||| | || ||| || Sbjct 302 CTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCG 243 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || |||| |||||| ||||| || |||| |||||||||||||| ||||| || ||||||| Sbjct 242 TCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 183 Query 35642 TCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGT 35697 ||| |||||| ||| | |||| | | |||||| |||| |||||||||| ||| Sbjct 182 TCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TCCACCTCCAGCGT 127 Query 35698 GATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || | || || || || || ||||| Sbjct 126 AATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq88 Length=36327 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || | ||||| || | || |||||||| ||||||||||| |||| | Sbjct 33113 CCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 33054 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || ||||| |||| ||||||||||| | ||| Sbjct 33053 AAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGG 32994 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| || |||||| ||||| | | | | |||||| ||| || ||| Sbjct 32993 ATACCCTCCTTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACC 32934 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||||| || ||||| || |||||||| Sbjct 32933 TCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||| || | ||||||||||| || |||||||| |||| | Sbjct 33341 CCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGAC 33282 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| ||||| || ||||| ||||||||||| | || Sbjct 33281 AGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGG 33222 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| |||||| ||| | |||| | | ||| || |||||||| Sbjct 33221 ATACCCTCCTTATCCTGAATCTTTGACTTGA-CGTTGTCGATCGTATCCGAAGATTCCAC 33163 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| || ||||| | || || || || |||||||| Sbjct 33162 TTCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || || ||||| || || |||||||| | | || || | || || || || || ||| Sbjct 32855 GTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGTTTGCCC 32796 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | ||||| | |||||||||| |||||| ||| Sbjct 32795 GCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTT- 32737 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| || |||||||| | ||||| || || || |||| || Sbjct 32736 AACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTCAGGGT 32677 Query 35719 TTTCACAAATATCTGCAT 35736 || || || || ||||| Sbjct 32676 CTTGACGAAGATTTGCAT 32659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| || || || |||| ||| || || | || |||| |||||| || ||||| Sbjct 32622 CTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAA 32563 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| ||||| ||| | | | Sbjct 32562 AATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATT 32503 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | || || || |||||||| | ||||| || || || |||| Sbjct 32502 GTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 32453 >seq2035 Length=5329 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || || |||||||| | | ||| | | || || |||||||| || Sbjct 1052 GTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGCTTGCCA 1111 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| |||| ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 1112 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1171 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||||||||||| |||||||| | ||||| || || ||||| | || Sbjct 1172 ACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 1231 Query 35720 TTCACAAATATCTGCAT 35736 ||||| || |||||||| Sbjct 1232 TTCACGAAGATCTGCAT 1248 >seq2403 Length=4098 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| || | | || || | || || ||||| || |||||||| | Sbjct 2169 CCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGA 2228 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | |||| || |||||||||| |||||| ||| | | | Sbjct 2229 TCAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 2288 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | ||||| || |||||||| | || ||||| | Sbjct 2289 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 2348 Query 35727 ATATCTGCA 35735 | ||||||| Sbjct 2349 AGATCTGCA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450759587622880