Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1383 107 6e-18 seq979 107 6e-18 >seq1383 Length=8527 Score = 107 bits (118), Expect = 6e-18 Identities = 126/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | | |||| || ||||| ||||||| ||||| || | || || ||||| ||| Sbjct 7308 CTTTGCCCAGCGCCTGGTCGCGTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTT 7367 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||||| | || ||||| || || |||| ||| |||||||| |||| Sbjct 7368 T-GCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACCTTCTCCAACG 7426 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 | || ||| || ||||||||| | || |||||||||||| || || Sbjct 7427 AGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCT 7475 >seq979 Length=11123 Score = 107 bits (118), Expect = 6e-18 Identities = 360/546 (66%), Gaps = 26/546 (5%) Strand=Plus/Plus Query 254972 GGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGC 255031 ||||| || || ||| ||||||| ||||||||| || |||||||| || ||||| ||| Sbjct 3826 GGCATCATCCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAAGGTGGC 3885 Query 255032 GGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAA 255088 ||| || || || || || |||||||||| ||||| ||||||||||| | |||| Sbjct 3886 AACAAGCGTCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGA- 3944 Query 255089 CGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCT 255146 ||| | || | || | || ||||| ||||| | || ||||| ||| Sbjct 3945 --GTTCCTCGACCTCCGT--AAGAACCACGGCAAGGAGGAAGTCCGTGCTCGCGATCTCT 4000 Query 255147 ACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGG 255205 | || ||||| ||| || || ||| || || || | || |||| ||| Sbjct 4001 TCCTGGCCCTCTGGATTCCCGACCTCTTCATGAAGCGTGTCGAGAAGAACGGAGA-GTGG 4059 Query 255206 AGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAA 255265 | || ||||| |||||| | ||||| || | ||| | | ||||||||||| || Sbjct 4060 ACTCTGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGATTGCTATGGTGACGAGTTCGAG 4119 Query 255266 AAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACG----CCAAGTGCCCGCGA 255320 |||||| | |||||||| |||||||| | ||||| | |||| |||| Sbjct 4120 GCCCTGTATGAGAAGTACGAGAAGGCCGGCCGCGGTCGTAAGACTATCAAG-GCCC---- 4174 Query 255321 AGAAGATCTGGAACACGATGGT-GCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTG 255379 | ||| ||||| | | || | | | | ||| || ||||| | || ||| | | Sbjct 4175 AAAAGCTCTGGTATGCCATCCTCGAGGCT-CAGACCGAGACCGGCAACCCCTTCATGCTC 4233 Query 255380 CACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTC 255438 |||| || ||| || |||| | | ||||| ||| ||| || || ||| |||| Sbjct 4234 TACAAGGATCACTGCAACCGCAAGAGC-AACCAGAAGAACCTCGGCACCATCCGCAGCTC 4292 Query 255439 GAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTT 255498 ||||||||||| ||||| | | || || || | | ||||| ||||| |||||| | Sbjct 4293 CAACCTGTGCACTGAGATCATCGAGTACTCGGCACCCGACGAGGTTGCCGTCTGCAACCT 4352 Query 255499 GGCGTC 255504 ||| || Sbjct 4353 GGCCTC 4358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588213164050020