Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq979 210 3e-49
seq1383 89.7 6e-13
>seq979
Length=11123
Score = 210 bits (232), Expect = 3e-49
Identities = 1012/1585 (64%), Gaps = 47/1585 (3%)
Strand=Plus/Minus
Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584
||||||||||| || |||||| ||||||||| ||||| | | ||| ||||||
Sbjct 5075 ATTTCCCAAACGGTCTTGTAGAGAGCCTTGATATCGGTCGGGATGTTAGGGATGTTCTGG 5016
Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644
|| ||||| || | | ||| | | |||||| | | |||||||||||| || |
Sbjct 5015 ATCGAACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCGGACCAGAGACCCATGTCG 4956
Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704
||||| || | ||| |||||||| |||||||| || | | | | |
Sbjct 4955 ACAAGGTCCTTCAAGAGCCAGGGGTTGACAACCTGGAACTCACCAGCCAAGACACGACGC 4896
Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764
|||||||||| | ||||| || || |||||||| || || |||| |||||| | ||
Sbjct 4895 TGGTAGATGTTGGACGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATTTGCGACGTC 4836
Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824
||||| || ||||| || || | | | ||||| || | ||| | |||||||||
Sbjct 4835 GAGGCGGTCGGCATGGGCGCGAGGAGCAAGCTGTTCCGGACACCATGCTCCTTGATCTTG 4776
Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
||||||| | |||||||| || | | | || | || || ||||||||| ||||
Sbjct 4775 GCCTTGAGCGCGTCCCAGTCCCAGAGGCCGGTCGGCGTGACGTT-CCACATGTCGTACTG 4717
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
|| | || ||||| | || || || ||| |||| || | ||||| | | ||
Sbjct 4716 GAGGATACCCTGGGATACCGGGGATCCTTCATAGGTCGAGTATGTGCCTTGCTCCTTGGC 4657
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
|| || || || ||| | |||||||| ||||| || ||||| | |||||
Sbjct 4656 CAGATCGCACGAGGCGGTCAGAGCCGCGTGATAGATGGTCTCGAAGATTTGCTTATTCAG 4597
Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058
||| || || || || | ||||| |||| || ||| |||| ||
Sbjct 4596 CTCACGAGCCTCGGGAGACTCGAAAGGCATGCGAAGCGCCAGGAAA-----GCATCGGCC 4542
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
|| || || ||||| | || || || | ||| ||||| || || || ||
Sbjct 4541 AGGCCCTGGACACCGACGCCGATGGGGCGGTGGCGCATGTTGCTGTTGTAAGCCTCCTGG 4482
Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA--TCTT-TGTG 111175
|| || || || ||| |||| ||| || ||| ||| | ||| | |
Sbjct 4481 ACCGGGTAGTGGTTGACGTCGATGATCTTGTTCAG---GTTGCGAACCACGACTTGGGCG 4425
Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235
| ||| || || || | | ||| | | | | | | ||| ||| ||||||
Sbjct 4424 ACTTCGTGCAGCTTCTGGAAGTCATAGACACCCTTGTTGTAGTCGACGAACTGAGGAAGG 4365
Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295
|| | || |||| ||||| || || ||| || | | |||||| | || ||
Sbjct 4364 GCCAGCGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGTGCCGAGTACTCGATGATCTCA 4305
Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355
|| || | |||||| || || || || | ||||| ||||| ||||| ||||||
Sbjct 4304 GTGCACAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 4245
Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415
|||||||||||||||| |||| | || ||||| ||||| | | ||| || || | |
Sbjct 4244 TGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATAC 4185
Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGT 111471
|| | | | | | || | || | || | || || || || |||||||||
Sbjct 4184 CAGAGCTTTTGGGCCTTG----ATAGTCTTACGACCGCGGCCGGCCTTCTCGTACTTCTC 4129
Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530
|| ||||| || ||||| ||| ||| || |||| || || || || || || |
Sbjct 4128 ATACAGGGCCTCGAACTCGTCA-CCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGC 4070
Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590
| | |||| ||| | || | ||| || ||||||||||| ||||| |||||||| |
Sbjct 4069 ACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGA 4010
Query 111591 GGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649
||| |||||||| | | ||| || | || || | || ||||| || | ||
Sbjct 4009 GGGCCAGGAAGAGATCGCGAGCACGGA-CTTCCTCCTTGCCGTGGTTCTTACGGAGGTCG 3951
Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709
|||||||| | || || |||||||| ||||| || |||| || | | || ||
Sbjct 3950 AGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACC---GGGA 3894
Query 111710 CGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763
||| ||| |||| | || ||||| || ||| ||| || || || ||||| ||
Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834
Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823
|| || |||| || || || || || || ||| | | || | |
Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774
Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAG 111881
||||||| | || || || || ||| ||| || || | ||||| | | | |||||
Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGT-CTTAAGAC 3716
Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941
| | ||||| || | ||| ||| ||||| || ||| ||||||||| ||| | ||
Sbjct 3715 TGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCT 3656
Query 111942 GCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999
| || || || ||||| || ||||||||||| || | || || |||| | || | |
Sbjct 3655 G-GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGA-ACTTGTT 3598
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
|||||| || ||||||||| | ||| || | || || || |||||||| ||
Sbjct 3597 GGACATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATGCCGACGGC 3538
Query 112060 GACCCGCATGAACATGTACTGTGGG 112084
|| ||||||| ||||| |||||||
Sbjct 3537 AACACGCATGATCATGTGCTGTGGG 3513
>seq1383
Length=8527
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||||||||| || || || || || || || |||||| || || |||||||| ||
Sbjct 7455 GTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 7396
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || | | || | ||| ||||||||||||||| |||
Sbjct 7395 GCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGC 7336
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818
|||||||| | ||||| | ||| ||||
Sbjct 7335 AGCAAACGCGACCAGGCGCTGGGCAAAGG 7307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627984614985600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |