Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq979 210 3e-49 seq1383 89.7 6e-13 >seq979 Length=11123 Score = 210 bits (232), Expect = 3e-49 Identities = 1012/1585 (64%), Gaps = 47/1585 (3%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 ||||||||||| || |||||| ||||||||| ||||| | | ||| |||||| Sbjct 5075 ATTTCCCAAACGGTCTTGTAGAGAGCCTTGATATCGGTCGGGATGTTAGGGATGTTCTGG 5016 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| || | | ||| | | |||||| | | |||||||||||| || | Sbjct 5015 ATCGAACCACCATCGGCGATGATGCGGTTCTTCATGTTGTCGGACCAGAGACCCATGTCG 4956 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| || | ||| |||||||| |||||||| || | | | | | Sbjct 4955 ACAAGGTCCTTCAAGAGCCAGGGGTTGACAACCTGGAACTCACCAGCCAAGACACGACGC 4896 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || || |||||||| || || |||| |||||| | || Sbjct 4895 TGGTAGATGTTGGACGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATTTGCGACGTC 4836 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||||| || ||||| || || | | | ||||| || | ||| | ||||||||| Sbjct 4835 GAGGCGGTCGGCATGGGCGCGAGGAGCAAGCTGTTCCGGACACCATGCTCCTTGATCTTG 4776 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 ||||||| | |||||||| || | | | || | || || ||||||||| |||| Sbjct 4775 GCCTTGAGCGCGTCCCAGTCCCAGAGGCCGGTCGGCGTGACGTT-CCACATGTCGTACTG 4717 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || ||||| | || || || ||| |||| || | ||||| | | || Sbjct 4716 GAGGATACCCTGGGATACCGGGGATCCTTCATAGGTCGAGTATGTGCCTTGCTCCTTGGC 4657 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || || || || ||| | |||||||| ||||| || ||||| | ||||| Sbjct 4656 CAGATCGCACGAGGCGGTCAGAGCCGCGTGATAGATGGTCTCGAAGATTTGCTTATTCAG 4597 Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 ||| || || || || | ||||| |||| || ||| |||| || Sbjct 4596 CTCACGAGCCTCGGGAGACTCGAAAGGCATGCGAAGCGCCAGGAAA-----GCATCGGCC 4542 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || || || ||||| | || || || | ||| ||||| || || || || Sbjct 4541 AGGCCCTGGACACCGACGCCGATGGGGCGGTGGCGCATGTTGCTGTTGTAAGCCTCCTGG 4482 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA--TCTT-TGTG 111175 || || || || ||| |||| ||| || ||| ||| | ||| | | Sbjct 4481 ACCGGGTAGTGGTTGACGTCGATGATCTTGTTCAG---GTTGCGAACCACGACTTGGGCG 4425 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | ||| || || || | | ||| | | | | | | ||| ||| |||||| Sbjct 4424 ACTTCGTGCAGCTTCTGGAAGTCATAGACACCCTTGTTGTAGTCGACGAACTGAGGAAGG 4365 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || |||| ||||| || || ||| || | | |||||| | || || Sbjct 4364 GCCAGCGAGGCCAGGTTGCAGACGGCAACCTCGTCGGGTGCCGAGTACTCGATGATCTCA 4305 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| || || || || | ||||| ||||| ||||| |||||| Sbjct 4304 GTGCACAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 4245 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 |||||||||||||||| |||| | || ||||| ||||| | | ||| || || | | Sbjct 4244 TGATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATAC 4185 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | | | | || | || | || | || || || || ||||||||| Sbjct 4184 CAGAGCTTTTGGGCCTTG----ATAGTCTTACGACCGCGGCCGGCCTTCTCGTACTTCTC 4129 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 || ||||| || ||||| ||| ||| || |||| || || || || || || | Sbjct 4128 ATACAGGGCCTCGAACTCGTCA-CCATAGCAATCGGCAAGGCCGGGGCACTCGTTGGGGC 4070 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | |||| ||| | || | ||| || ||||||||||| ||||| |||||||| | Sbjct 4069 ACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAGA 4010 Query 111591 GGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 ||| |||||||| | | ||| || | || || | || ||||| || | || Sbjct 4009 GGGCCAGGAAGAGATCGCGAGCACGGA-CTTCCTCCTTGCCGTGGTTCTTACGGAGGTCG 3951 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 111709 |||||||| | || || |||||||| ||||| || |||| || | | || || Sbjct 3950 AGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACC---GGGA 3894 Query 111710 CGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 ||| ||| |||| | || ||||| || ||| ||| || || || ||||| || Sbjct 3893 CGCTTGTTGCCACCTTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGG 3834 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 || || |||| || || || || || || ||| | | || | | Sbjct 3833 ATGATGCCATTGGAAGTGCCGTTGGTGCCGGCGATGTATGATCCAGTCGCACGGATGCGG 3774 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAG 111881 ||||||| | || || || || ||| ||| || || | ||||| | | | ||||| Sbjct 3773 TGGATGTTGAGGCCGATGCCGCCTGCCATCTTGGAAATCATGGCGCA-AGT-CTTAAGAC 3716 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | | ||||| || | ||| ||| ||||| || ||| ||||||||| ||| | || Sbjct 3715 TGTCGTAGATGCCCTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAAGAGGAAAGCT 3656 Query 111942 GCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 | || || || ||||| || ||||||||||| || | || || |||| | || | | Sbjct 3655 G-GGCCTGAGGGGTACCGGCGTTGAAGAGGGTGGGGGAGGCATGTGTGAAGA-ACTTGTT 3598 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| || ||||||||| | ||| || | || || || |||||||| || Sbjct 3597 GGACATGAGGTTGTATGTCTCGATGACGCGCTCCACGTTGTCTCCCCAGATGCCGACGGC 3538 Query 112060 GACCCGCATGAACATGTACTGTGGG 112084 || ||||||| ||||| ||||||| Sbjct 3537 AACACGCATGATCATGTGCTGTGGG 3513 >seq1383 Length=8527 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || || || || || || || |||||| || || |||||||| || Sbjct 7455 GTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 7396 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | || | ||| ||||||||||||||| ||| Sbjct 7395 GCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGC 7336 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||||| | ||||| | ||| |||| Sbjct 7335 AGCAAACGCGACCAGGCGCTGGGCAAAGG 7307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984614985600