Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq979 271 9e-68 seq1383 134 2e-26 >seq979 Length=11123 Score = 271 bits (300), Expect = 9e-68 Identities = 1155/1802 (64%), Gaps = 27/1802 (1%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 5237 CGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGTGAAGTGCATGCTGGTG 5178 Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | |||| | | | || || | |||| | ||| | ||||| ||||||||||| Sbjct 5177 ATCTTGCCCATGCTCGG-CTCGCGCATGTGAATGTTGAGCGACTGGGACTGATCGATGAA 5119 Query 117956 -GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 ||| || ||||| || ||||| | || || | ||||||||| || ||| Sbjct 5118 AGCG-CCACGATCGGCAGCCATCTGAACGACGGTGCGCTGAGAGATTTCCCAAACGGTCT 5060 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| ||| ||||| ||||| | ||| || ||||| || ||||| | Sbjct 5059 TGTAGAGAGCCTTGATATCGGTCGGGATGTTAGGGATGTTCTGGATCGAACCACCATCGG 5000 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || ||| | | |||||| | | ||||||||||| || | || |||| || || Sbjct 4999 CGATGATGCGGTTCTTCATGTTGTCGGACCAGAGACCCATGTCGACAAGGTCCTTCAAGA 4940 Query 118135 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 118194 | |||||||| |||||||| || | | || | | | ||||| |||| || Sbjct 4939 GCCAGGGGTTGACAACCTGGAACTCACCAGCCAAGACACGACGCTGGTAGATGTTGGACG 4880 Query 118195 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 118254 |||| ||||| ||||| || ||||| |||| |||||| | || ||||| || ||||||| Sbjct 4879 TGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATTTGCGACGTCGAGGCGGTCGGCATGG 4820 Query 118255 GTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCC 118314 | || | ||| | |||||| |||| ||| | ||| | || ||||||| ||||||| Sbjct 4819 GCGCGAGGAGCAAGCTGTTCCGGACACCATGCTCCTTGATCTTGGCCTTGAGCGCGTCCC 4760 Query 118315 AGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 |||| || | | | | | | |||||| || ||||||||||||| ||||| Sbjct 4759 AGTCCCAGAGGCCGGTCGGCGTGACGTTCCACATGTCGTACTGGAGGATACCCTGGGATA 4700 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || ||||| ||| | ||| |||| ||| | ||| |||| ||| | || Sbjct 4699 CCGGGGATCCTTCATAGGTCGAGTATGTGCCTTGCTCCTTGGCCAGATCGCACGAGGCGG 4640 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 || || |||||||| || || || || || | ||||| | |||||| | Sbjct 4639 TCAGAGCCGCGTGATAGATGGTCTCGAAGATTTGCTTATTCAGCTCACGAGCCTCGGGAG 4580 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 | || || | | || | | || |||| || || || |||||||||| ||| | Sbjct 4579 ACTCGAAAGGCATGCGAAGCGCCAGGAAAGCATCGGCCAGGCCCTGGACACCGACGCCGA 4520 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGA 118614 | ||||| || | ||| || || ||| || || || || || |||| Sbjct 4519 TGGGGCGGTGGCGCATGTTGCTGTTGTAAGCCTCCTGGACCGGGTAGTGGTTGACGTCGA 4460 Query 118615 TAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAA 118674 | | | | || || || || || | | || ||| || ||||| | | | ||| Sbjct 4459 TGATCTTGTTCAGGTTGCGAACCACGACTTGGGCGACTTCGTGCAGCTTCTGGAAGTCAT 4400 Query 118675 AACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAG 118734 | | | | | | ||| ||| ||||||||| | || ||||| || || || | Sbjct 4399 AGACACCCTTGTTGTAGTCGACGAACTGAGGAAGGGCCAGCGAGGCCAGGTTGCAGACGG 4340 Query 118735 AGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGG 118794 ||| || | | |||||| || || || ||||||| ||| || || |||| Sbjct 4339 CAACCTCGTCGGGTGCCGAGTACTCGATGATCTCAGTGCACAGGTTGGAGCTGCGGATGG 4280 Query 118795 TGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCG 118854 |||| | |||||| || || ||| ||| || ||||||||| |||||| | || Sbjct 4279 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 4220 Query 118855 TCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTG 118913 | || ||||| || || | || ||| || || | ||||| | | | || | | ||| Sbjct 4219 TGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTG-ATAGT- 4162 Query 118914 GCGTTGG--CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCA 118971 | | | | || || | | ||||||||| || ||||| || ||||| ||||| Sbjct 4161 -CTTACGACCGCGGCCGGCCTTCTCGTACTTCTCATACAGGGCCTCGAACTCGTCACCAT 4103 Query 118972 CGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCT 119031 | || | || || || || | ||||| | |||| ||| | || || || Sbjct 4102 AGCAATCGGCAAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCTCCGTTCTTCT 4043 Query 119032 CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAG 119091 | || ||||||||||||||||| || |||||||| ||| ||||||||| ||| || Sbjct 4042 CGACACGCTTCATGAAGAGGTCGGGAATCCAGAGGGCCAGGAAGAGATCGCGAGCACGGA 3983 Query 119092 CTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACG 119151 |||| || | || || || ||| | || | || || | || || |||||||| | Sbjct 3982 CTTCCTCCTTGCCGTGGTTCTTACGGAGGTCGAGGAACTCAAAGACGTCGGCGTGCCAAG 3923 Query 119152 GTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCG 119208 | || ||||| | || | | || ||| ||| | |||| || || | | Sbjct 3922 GCTCGAGGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCTTGGTCAACGTAGCGGG 3863 Query 119209 CAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCC 119267 | ||| ||| || ||||| ||||| || ||||| |||| ||| ||| || || || Sbjct 3862 CGGTGTTGTTGAAGACACGGAGCATGGGGATGATGCCATTGGAAGTGCCGTTGGTGCCGG 3803 Query 119268 CGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 119326 ||| || || | | | || | || |||||||| | || || || |||||| Sbjct 3802 CGATGTATGATCC--AGTCGCACGGATGCGGTGGATGTTGAGGCCGATGCCGCCTGCCAT 3745 Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386 ||| || || ||||| | | |||||| ||||||| || ||||| |||| |||| Sbjct 3744 CTTGGAAATCATGGCGCAAGTCTTAAGACTGTCGTAGATGCCCTCGATGCTGTCATCCTT 3685 Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAG 119445 | ||| |||||||| || | || |||||| || ||||| ||||||||||| | Sbjct 3684 CATGTCGACCAGGAAGCAAGAGGAAAGCTG-GGCCTGAGGGGTACCGGCGTTGAAGAGGG 3626 Query 119446 TTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACG-GC 119503 | || | || || |||| | || | | |||||| || ||| ||||| | |||| || Sbjct 3625 TGGGGGAGGCATGTGTGAAGA-ACTTGTTGGACATGAGGTTGTATGTCTCGATGACGCGC 3567 Query 119504 GGGA--ATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTT 119561 | ||||| ||| | || |||| | || ||||| | ||||| || || Sbjct 3566 TCCACGTTGTCTCCCCAG---ATGCCGACGGCAACACGCATGATCATGTGCTGTGGGCGC 3510 Query 119562 TCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAA 119621 || | | | || | |||| || ||||||| ||||| |||||||| ||||| Sbjct 3509 TCGACAATCTTGCCGTTGAGCTTCAGGAGGTATGAGCGCTCCAGGGTCTTGAAGCCAAAG 3450 Query 119622 TA 119623 || Sbjct 3449 TA 3448 >seq1383 Length=8527 Score = 134 bits (148), Expect = 2e-26 Identities = 304/451 (67%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| | | ||| |||||||| Sbjct 7754 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATG 7695 Query 129788 AAATCAAATGGGTTCTTTGA--GTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | || | | || || || | | | | ||| || | Sbjct 7694 AAGTCGAAGGGGTTTGTCGACCGGTACACCTT-CTCGTTGCCGAGGGCGAC-GAGCAGGC 7637 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||||||||||| |||| | ||||||||| |||| ||| | Sbjct 7636 GGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGGGCGC 7577 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || || |||| ||| ||| ||| ||| || || | |||| | | Sbjct 7576 ACGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATGCGCACGGCGTCGACGATGATGTCCT 7517 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024 |||| || | ||| || | ||| || || | ||| || ||| || || Sbjct 7516 CAATGACCTGCTTGCTGGGGCGGTTGTT-AAGGTGCGAGAACAGCAGGCAGGCGAAGTCG 7458 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 |||||||||||||||||| |||||||| || || |||||| ||| || |||||||| Sbjct 7457 GTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGG 7398 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| || | ||| | || ||||||||| ||||| ||| Sbjct 7397 CCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACA 7338 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || ||||| | || |||| ||||||| Sbjct 7337 GCAGCAAACGCGACCAGGCGCTGGGCAAAGG 7307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388539064160