Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq88 123 8e-23 seq1985 114 4e-20 seq2035 100 9e-16 >seq88 Length=36327 Score = 123 bits (136), Expect = 8e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || || || ||||| ||||| ||||||| Sbjct 32665 TTTGCATACCACCACGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTAT 32606 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || |||||||| | || || || ||||| || || || ||||| | Sbjct 32605 AGTCGGACAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGT 32546 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || ||||| || || | |||||| | Sbjct 32545 CGGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCAGAGG 32486 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || | ||||| ||||| Sbjct 32485 ACTCCACCTCAAGGGTGATGGTCTTGCCGGT 32455 Score = 122 bits (134), Expect = 3e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || ||||| || || || || || || || ||||| || ||||| || || ||||| Sbjct 33078 CTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAA 33019 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 || || || ||||| |||||||| || || || ||||| || || || | || ||||| Sbjct 33018 AATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGGATCTTCGACTTCACATT 32959 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||||| || || | ||||| || | ||| | |||||||| || || || || || Sbjct 32958 GTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCAC 32899 Query 140726 AAAAATCTGCAT 140737 ||||||||||| Sbjct 32898 GAAAATCTGCAT 32887 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || ||||| || || || ||||| ||||| Sbjct 32889 CATACCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATC 32830 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 32829 CGAAAGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGG 32770 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | || || | || Sbjct 32769 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTC 32710 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 32709 CACCTCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || |||||| ||| || || || || || || || | || || ||||| || | Sbjct 33321 CAAG-TGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCATCCTCCA 33263 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || || || ||||| | ||| ||||| || || || || || || |||||||||| Sbjct 33262 ACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAA 33203 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || || || |||| ||| || | ||| ||||| || |||| ||||| | Sbjct 33202 TCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAATCGTCTTCC 33143 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || |||||||| Sbjct 33142 CCGTGAGGGTCTTGACGAAGATCTGCAT 33115 >seq1985 Length=5503 Score = 114 bits (126), Expect = 4e-20 Identities = 416/645 (64%), Gaps = 17/645 (3%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| ||||| || |||||| | || || || || | ||| || || || || Sbjct 2406 GAAATTATTGCCAATGACCAGGGTAACCGCACCACCCCGTCGTTCGTGGCCTTCACGGAC 2465 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | ||||| ||| | || || || || | || || || | || || Sbjct 2466 ACCGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAACACC 2525 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || ||||| || ||||| | | || | || | | | || | | Sbjct 2526 GTCTTCGACGCCAAGCGCCTCATTGGCCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 2583 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATTATTG 349496 || | || || || || || | | || | ||| ||| | || || || || | Sbjct 2584 ATATGAAGCACTTCCCCTTCAA----GATC--ATCGACCGTGCTGGCAAGCCCATCATCG 2637 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGT 349554 |||| || | || || || || || | || |||| || || |||| || ||||| Sbjct 2638 AGGTCGAGTTCAAGGGCGAGCAGAAG--ACCTTCACCCCGGAGGAGGTTTCTTCCATGGT 2695 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | |||||| | || | || | || || | | ||||| Sbjct 2696 CCTGACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGGCACCGTCAACAACGCTGT 2755 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | |||| || || ||||| || || || |||||||| || || || || || || Sbjct 2756 TGTTACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGACGCCGGTCT 2815 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || || || | || || || || || ||||| || || ||||| || Sbjct 2816 CATTGCCGGTCTTAACGTCCTGCGCATCATCAACGAGCCTACTGCGGCCGCCATTGCCTA 2875 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | ||| || || | || || || ||| | |||||||| Sbjct 2876 CGGTCTCGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 2935 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 2936 TACCTTCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGC 2995 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 |||||| || || | ||||| || || || || || ||||| || Sbjct 2996 TGGTGACACCCACTTGGGTGGCGAGGACTTCGACAACCGTCTTGT 3040 >seq2035 Length=5329 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || ||||| ||||| || Sbjct 1021 ACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGA 1080 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || | ||||| ||||| || || ||||||||||| || || ||||| ||||| || Sbjct 1081 GAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 1140 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || ||||| || || | || | || || Sbjct 1141 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCAC 1200 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 1201 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515137215906908