Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq979 304 1e-77
seq1383 143 3e-29
seq507 95.1 1e-14
seq262 84.2 2e-11
>seq979
Length=11123
Score = 304 bits (336), Expect = 1e-77
Identities = 529/763 (69%), Gaps = 10/763 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | || ||| || ||| || ||| ||| ||||| |||
Sbjct 3527 TCATGCGTGTTGCCGTCGGCATCTGGGGAGACAACGTGGAGCGCGTCATCGAGACATACA 3586
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | |||| ||| || || ||| | || ||||| |||||||| |||||
Sbjct 3587 ACCTCATGTCCAACAAGTTCTTCACACATGCCTCCCCCACCCTCTTCAACGCCGGTACCC 3646
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| | ||| | || ||||||||||| | |||||||||||| ||||| ||||
Sbjct 3647 CTCAGGCCCAGCTTTCCTCTTGCTTCCTGGTCGACATGAAGGATGACAGCATCGAGGGCA 3706
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| | || ||| || ||| || |||||| | | || || ||||| ||
Sbjct 3707 TCTACGACAGTCTTAAGACTTGCGCCATGATTTCCAAGATGGCAGGCGGCATCGGCCTCA 3766
Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || | || ||||||||| || || ||| || || |||||| || |
Sbjct 3767 AC--ATCCACCGCATCCGTGCGACTGGATCATACATCGCCGGCACCAACGGCACTTCCAA 3824
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| ||| | || |||||||| |||||||||||||| ||||| ||||| |||| |||||
Sbjct 3825 TGGCATCATCCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAAGGTGG 3884
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || ||||||||||||||||| |||||||||||| | | ||
Sbjct 3885 CAACAAGCGTCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGA 3944
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
||| ||||| || ||| ||| || || | || || | || ||| || || || ||
Sbjct 3945 GTTCCTCGACCTCCGTAAGAACCACGGCAAGGAGGAAGTCCG-TGCTCGCGATCTCTTCC 4003
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| || |||||||| |||||||||||| | || |||||| ||| |||||| |
Sbjct 4004 TGGCCCTCTGGATTCCCGACCTCTTCATGAAGCGTGTCGAGAAGAACGGAGAGTGGACTC 4063
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||||| ||||||||||||||||| | | ||| ||||| ||||| | |
Sbjct 4064 TGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGATTGCTATGGTGACGAGTTCGAGGCCC 4123
Query 53790 TGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847
||||| || |||| | || | |||||| |||| ||||||| | || |
Sbjct 4124 TGTATGAGAAGTACGAGAAGGCC--GGCCGCGGTCGTAAGACTATCAAGGCCCAAAAGCT 4181
Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907
||| |||| |||||| || ||| ||||| || | || | |||| |||||||||
Sbjct 4182 CTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 4241
Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
| |||| |||||||||||||||||| ||||| ||||
Sbjct 4242 TCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATC 4284
Score = 100 bits (110), Expect = 3e-16
Identities = 289/438 (66%), Gaps = 9/438 (2%)
Strand=Plus/Plus
Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553
||||| | ||||| ||||| ||||| |||||| | || ||| ||||||||||||| |
Sbjct 4808 TGCTCCTCGCGCCCATGCCGACCGCCTCGACGTCGCAAATCCTGGGCAACAACGAATGCT 4867
Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613
||||||| |||||| |||||||||||| ||| || | | || |||||||| |
Sbjct 4868 TCGAGCCCTACACGTCCAACATCTACCAGCGTCGTGTCTTGGCTGGTGAGTTCCAGGTTG 4927
Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA 55673
||||| ||| | |||||||| | || ||| | | || ||||
Sbjct 4928 TCAACCCCTGGCTCTTGAAGGACCTTGTCGACATGGGTCTCTGGTCCGACAACATGAAGA 4987
Query 55674 --CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCCTCTGCG-TCT 55728
|| || | || | || || || |||||| ||| | ||| || | |
Sbjct 4988 ACCGCATCATCGCCG--ATGGTGGTTCGATCCAGAACATCCCTAACATCCCGACCGATAT 5045
Query 55729 CAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGC 55788
||||| | ||| ||| || ||||| || | ||| | | || | ||| |||
Sbjct 5046 CAAGGCTCTCTACAAGACCGTTTGGGAAATCTCTCAGCGCACCGTCGTTCAGATGGCTGC 5105
Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTT 55847
|||||||| || | |||||| ||||||||||| || ||||| |||| | || |
Sbjct 5106 CGATCGTGGCGCTTTCATCGATCAGTCCCAGTCGCTCAACATTCACATGCGCGAGCCGAG 5165
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
|| ||| |||| | | | |||||||| ||| |||||| || ||||||||||| |
Sbjct 5166 CA-TGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACGGGCA 5224
Query 55908 TGTACTATCTGCGGACCC 55925
||||||| || || ||||
Sbjct 5225 TGTACTACCTCCGCACCC 5242
>seq1383
Length=8527
Score = 143 bits (158), Expect = 3e-29
Identities = 540/828 (65%), Gaps = 42/828 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 7754 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATG 7695
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG- 74578
||||||| ||||| | | | ||| | |||||| || | | || | |||
Sbjct 7694 AAGTCGAAGGGGTTTGTCGACCGGTACAC---CTTCTCGTTGCCGA---GGGCGACGAGC 7641
Query 74579 --GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636
||| || || || || | |||||||||| |||| | | |||||||| ||
Sbjct 7640 AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 7581
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696
||||||||| |||||||||| ||||| ||| | |||| | | | ||| ||
Sbjct 7580 GCGCACGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATG-CGCACGGCG--TCGACGATG 7524
Query 74697 TTGTG---AATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCAC 74749
||| |||| | | || |||| || | | ||||| ||| | ||| | ||
Sbjct 7523 ATGTCCTCAATGACCTGCTTGCTGGGGCGGTTGT---TAAGGTGCGAGAACAGCAGGCA- 7468
Query 74750 GGCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808
||| || || || ||| || || || | || | || || || || | ||||
Sbjct 7467 GGCGAAGTCGGTGTG-GAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGC 7409
Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868
| ||||| || || |||||||| | ||| ||||||| |||| ||| ||||||||||
Sbjct 7408 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 7349
Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CATC--GGAAGTCA 74925
| || |||||| ||||| ||||| ||||| || || || | | | || | ||| |
Sbjct 7348 TACCCTCGACAGCAGCAAACGCGACCAGGCGCTGGGCAAAGGTCGACTTCTGGTCAGTGA 7289
Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGA 74985
|||| | | ||||| || || || || || |||| || ||||| || | ||
Sbjct 7288 TCCACCGCAGGGCCCAGTCGGCCTTCTTGCGGATGGCGGGGATGGTGTCGATGGCATTGA 7229
Query 74986 AGAGGCTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043
| ||| ||| | | || | || ||||||| | ||||||| | || ||||| ||
Sbjct 7228 ACAGG--TGCGTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 7171
Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103
||| || || || ||| | | |||| | ||||||| | || ||||| | |
Sbjct 7170 CTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGGAC 7111
Query 75104 CTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161
||| || | || |||| || | | | ||||| |||||||||||||||| |||
Sbjct 7110 CTGGACCTCGCCGCTGAAGCGCTC--GACCAGGTTCTCGTTGACGATGCCGTCCGACGCG 7053
Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCC 75218
||||| ||||| || | ||| |||| ||||||||| ||| |||| |
Sbjct 7052 GCGAAGAAAGCGAGGATGTGAGAGATGAAGTACTTCTCATCGTCGTTGATCTTGTTGTTC 6993
Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266
|| || | |||||| | | |||||||||||| | |||||||||
Sbjct 6992 CAGTCGTGGAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAA 6945
>seq507
Length=17182
Score = 95.1 bits (104), Expect = 1e-14
Identities = 184/268 (69%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 130938 ACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAGATTCAGC 130997
|||| ||| | || || || || || ||||||| || || | | || | | |||
Sbjct 16871 ACAACGTGGTGGGCACGCAGGTGCTGCTCGAGAGCGTGCGGCAGCACGGGCGGGTCAAGC 16930
Query 130998 GTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGTTGATGGTCACGTGACGTGTG 131057
| ||||||||||| |||||||||||||||||||| ||| | || | || | || |
Sbjct 16931 GGTTCGTGCACGTCAGCACGGACGAGGTGTACGGCGAGACCAACGG-CGAGT-TCCTG-G 16987
Query 131058 ACGAGACGGCAGCATTAAACCCAATGAATCCCTACGCGGCAAGCAAAGCGGCTGCTGAGC 131117
|||||||| || || |||| | || |||||| |||| ||| ||||| || |||
Sbjct 16988 ACGAGACGCACGCCTTCCACCCGACCAACCCCTACTCGGCCTCCAAGGCGGCCGCCGAGA 17047
Query 131118 TCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCATTACACGCGGAAACA 131177
| || || | || ||| |||||| | ||| | ||| |||||| || | ||||
Sbjct 17048 TGTACGTGCACGCCTACGCCAAGTCGTTCAAGATCCCGACCATCATCGTCCGGAGTAACA 17107
Query 131178 ACGTGTTTGGGCCGAAGCAATACCCGGA 131205
|||||| |||||| || ||||| ||
Sbjct 17108 ACGTGTACGGGCCGTGCCAGTACCCCGA 17135
>seq262
Length=23884
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133
|||||| | ||||| || || ||||| || ||||| ||||||||| | || |||
Sbjct 8076 ACTGAAGATGTTGGTGAGTTTTGCACCATAACCGTTACGACCACCGACCGTTTTCTTCTC 8017
Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
||||||| |||||| || | ||||||||||| || ||||| ||||| |||||
Sbjct 8016 GTCGTCGTCGTAGTTTGAACCCGTCAAAAGGTGACCGAAGATAAGCTCCGGGAT 7963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547174712552800
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