Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq979 304 1e-77 seq1383 143 3e-29 seq507 95.1 1e-14 seq262 84.2 2e-11 >seq979 Length=11123 Score = 304 bits (336), Expect = 1e-77 Identities = 529/763 (69%), Gaps = 10/763 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | || ||| || ||| || ||| ||| ||||| ||| Sbjct 3527 TCATGCGTGTTGCCGTCGGCATCTGGGGAGACAACGTGGAGCGCGTCATCGAGACATACA 3586 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||| ||| || || ||| | || ||||| |||||||| ||||| Sbjct 3587 ACCTCATGTCCAACAAGTTCTTCACACATGCCTCCCCCACCCTCTTCAACGCCGGTACCC 3646 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| | ||| | || ||||||||||| | |||||||||||| ||||| |||| Sbjct 3647 CTCAGGCCCAGCTTTCCTCTTGCTTCCTGGTCGACATGAAGGATGACAGCATCGAGGGCA 3706 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| | || ||| || ||| || |||||| | | || || ||||| || Sbjct 3707 TCTACGACAGTCTTAAGACTTGCGCCATGATTTCCAAGATGGCAGGCGGCATCGGCCTCA 3766 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | || ||||||||| || || ||| || || |||||| || | Sbjct 3767 AC--ATCCACCGCATCCGTGCGACTGGATCATACATCGCCGGCACCAACGGCACTTCCAA 3824 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| ||| | || |||||||| |||||||||||||| ||||| ||||| |||| ||||| Sbjct 3825 TGGCATCATCCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAAGGTGG 3884 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||||||||||||||| |||||||||||| | | || Sbjct 3885 CAACAAGCGTCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGA 3944 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| ||||| || ||| ||| || || | || || | || ||| || || || || Sbjct 3945 GTTCCTCGACCTCCGTAAGAACCACGGCAAGGAGGAAGTCCG-TGCTCGCGATCTCTTCC 4003 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || |||||||| |||||||||||| | || |||||| ||| |||||| | Sbjct 4004 TGGCCCTCTGGATTCCCGACCTCTTCATGAAGCGTGTCGAGAAGAACGGAGAGTGGACTC 4063 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||||| ||||||||||||||||| | | ||| ||||| ||||| | | Sbjct 4064 TGATGTGCCCCAACGAGTGCCCCGGCCTTGCCGATTGCTATGGTGACGAGTTCGAGGCCC 4123 Query 53790 TGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGT 53847 ||||| || |||| | || | |||||| |||| ||||||| | || | Sbjct 4124 TGTATGAGAAGTACGAGAAGGCC--GGCCGCGGTCGTAAGACTATCAAGGCCCAAAAGCT 4181 Query 53848 ATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| |||| |||||| || ||| ||||| || | || | |||| ||||||||| Sbjct 4182 CTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA 4241 Query 53908 TTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | |||| |||||||||||||||||| ||||| |||| Sbjct 4242 TCACTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATC 4284 Score = 100 bits (110), Expect = 3e-16 Identities = 289/438 (66%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||| | ||||| ||||| ||||| |||||| | || ||| ||||||||||||| | Sbjct 4808 TGCTCCTCGCGCCCATGCCGACCGCCTCGACGTCGCAAATCCTGGGCAACAACGAATGCT 4867 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| |||||| |||||||||||| ||| || | | || |||||||| | Sbjct 4868 TCGAGCCCTACACGTCCAACATCTACCAGCGTCGTGTCTTGGCTGGTGAGTTCCAGGTTG 4927 Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA 55673 ||||| ||| | |||||||| | || ||| | | || |||| Sbjct 4928 TCAACCCCTGGCTCTTGAAGGACCTTGTCGACATGGGTCTCTGGTCCGACAACATGAAGA 4987 Query 55674 --CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGATTCCTCTGCG-TCT 55728 || || | || | || || || |||||| ||| | ||| || | | Sbjct 4988 ACCGCATCATCGCCG--ATGGTGGTTCGATCCAGAACATCCCTAACATCCCGACCGATAT 5045 Query 55729 CAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGC 55788 ||||| | ||| ||| || ||||| || | ||| | | || | ||| ||| Sbjct 5046 CAAGGCTCTCTACAAGACCGTTTGGGAAATCTCTCAGCGCACCGTCGTTCAGATGGCTGC 5105 Query 55789 TGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTT 55847 |||||||| || | |||||| ||||||||||| || ||||| |||| | || | Sbjct 5106 CGATCGTGGCGCTTTCATCGATCAGTCCCAGTCGCTCAACATTCACATGCGCGAGCCGAG 5165 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 || ||| |||| | | | |||||||| ||| |||||| || ||||||||||| | Sbjct 5166 CA-TGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTTGGTCTCAAGACGGGCA 5224 Query 55908 TGTACTATCTGCGGACCC 55925 ||||||| || || |||| Sbjct 5225 TGTACTACCTCCGCACCC 5242 >seq1383 Length=8527 Score = 143 bits (158), Expect = 3e-29 Identities = 540/828 (65%), Gaps = 42/828 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 7754 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATG 7695 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG- 74578 ||||||| ||||| | | | ||| | |||||| || | | || | ||| Sbjct 7694 AAGTCGAAGGGGTTTGTCGACCGGTACAC---CTTCTCGTTGCCGA---GGGCGACGAGC 7641 Query 74579 --GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||| || || || || | |||||||||| |||| | | |||||||| || Sbjct 7640 AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGG 7581 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696 ||||||||| |||||||||| ||||| ||| | |||| | | | ||| || Sbjct 7580 GCGCACGGCAGGGCCTCGGTGAGGAACTCCTGCTCGATG-CGCACGGCG--TCGACGATG 7524 Query 74697 TTGTG---AATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCAC 74749 ||| |||| | | || |||| || | | ||||| ||| | ||| | || Sbjct 7523 ATGTCCTCAATGACCTGCTTGCTGGGGCGGTTGT---TAAGGTGCGAGAACAGCAGGCA- 7468 Query 74750 GGCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 ||| || || || ||| || || || | || | || || || || | |||| Sbjct 7467 GGCGAAGTCGGTGTG-GAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTCAGGC 7409 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 | ||||| || || |||||||| | ||| ||||||| |||| ||| |||||||||| Sbjct 7408 CGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 7349 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CATC--GGAAGTCA 74925 | || |||||| ||||| ||||| ||||| || || || | | | || | ||| | Sbjct 7348 TACCCTCGACAGCAGCAAACGCGACCAGGCGCTGGGCAAAGGTCGACTTCTGGTCAGTGA 7289 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGA 74985 |||| | | ||||| || || || || || |||| || ||||| || | || Sbjct 7288 TCCACCGCAGGGCCCAGTCGGCCTTCTTGCGGATGGCGGGGATGGTGTCGATGGCATTGA 7229 Query 74986 AGAGGCTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 | ||| ||| | | || | || ||||||| | ||||||| | || ||||| || Sbjct 7228 ACAGG--TGCGTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 7171 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||| || || || ||| | | |||| | ||||||| | || ||||| | | Sbjct 7170 CTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGGAC 7111 Query 75104 CTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| || | || |||| || | | | ||||| |||||||||||||||| ||| Sbjct 7110 CTGGACCTCGCCGCTGAAGCGCTC--GACCAGGTTCTCGTTGACGATGCCGTCCGACGCG 7053 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCC 75218 ||||| ||||| || | ||| |||| ||||||||| ||| |||| | Sbjct 7052 GCGAAGAAAGCGAGGATGTGAGAGATGAAGTACTTCTCATCGTCGTTGATCTTGTTGTTC 6993 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 || || | |||||| | | |||||||||||| | ||||||||| Sbjct 6992 CAGTCGTGGAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAA 6945 >seq507 Length=17182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 184/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 130938 ACAATGTGCTCGGAACTCATGTCCTACTCGAGACGGTTCGCAATTATGGCAAGATTCAGC 130997 |||| ||| | || || || || || ||||||| || || | | || | | ||| Sbjct 16871 ACAACGTGGTGGGCACGCAGGTGCTGCTCGAGAGCGTGCGGCAGCACGGGCGGGTCAAGC 16930 Query 130998 GTTTCGTGCACGTGAGCACGGACGAGGTGTACGGTGAGGTTGATGGTCACGTGACGTGTG 131057 | ||||||||||| |||||||||||||||||||| ||| | || | || | || | Sbjct 16931 GGTTCGTGCACGTCAGCACGGACGAGGTGTACGGCGAGACCAACGG-CGAGT-TCCTG-G 16987 Query 131058 ACGAGACGGCAGCATTAAACCCAATGAATCCCTACGCGGCAAGCAAAGCGGCTGCTGAGC 131117 |||||||| || || |||| | || |||||| |||| ||| ||||| || ||| Sbjct 16988 ACGAGACGCACGCCTTCCACCCGACCAACCCCTACTCGGCCTCCAAGGCGGCCGCCGAGA 17047 Query 131118 TCTATGTCCGGGCGTACACCAAGTGCTACAACCTACCGTGCATCATTACACGCGGAAACA 131177 | || || | || ||| |||||| | ||| | ||| |||||| || | |||| Sbjct 17048 TGTACGTGCACGCCTACGCCAAGTCGTTCAAGATCCCGACCATCATCGTCCGGAGTAACA 17107 Query 131178 ACGTGTTTGGGCCGAAGCAATACCCGGA 131205 |||||| |||||| || ||||| || Sbjct 17108 ACGTGTACGGGCCGTGCCAGTACCCCGA 17135 >seq262 Length=23884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133 |||||| | ||||| || || ||||| || ||||| ||||||||| | || ||| Sbjct 8076 ACTGAAGATGTTGGTGAGTTTTGCACCATAACCGTTACGACCACCGACCGTTTTCTTCTC 8017 Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||| |||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 8016 GTCGTCGTCGTAGTTTGAACCCGTCAAAAGGTGACCGAAGATAAGCTCCGGGAT 7963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174712552800