Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq353 114 1e-20 >seq353 Length=20357 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 || || || || ||||| | || ||||| |||| |||| ||||||| | |||||| Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 ||||| ||||| |||| | |||| | | || || | || || ||||| ||| Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 | ||||| ||| || || | ||||||||||||||| || || || || ||||||||||| Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870 Query 30020 CCCGACCTCTGGTAGAGCTGACA 30042 | ||| | ||||||||||| || Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847 Score = 113 bits (124), Expect = 4e-20 Identities = 258/380 (68%), Gaps = 10/380 (3%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 |||||| || || || ||||| | || ||| ||||||||||||| | | || Sbjct 5729 GTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGAG 5670 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30201 ||| | ||| |||||| ||| | || |||| | |||||| || ||||| Sbjct 5669 GCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCCC 5610 Query 30202 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30261 | || |||||||| | | ||||| ||||| || ||||| |||| ||||||||| Sbjct 5609 CTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGAA 5550 Query 30262 CCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320 ||||||||| || |||||||| ||||| | | | | || | ||| |||||| | | Sbjct 5549 CCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGGA 5491 Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA-GAGA-GCTCTTTG-- 30376 | || | || |||||| ||||||||||||| | | |||| | | |||| | | | || Sbjct 5490 ACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA-CGCCTTGTGAGGAGAGGGTGTGTGAC 5432 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 ||| ||| || || |||||| || ||||| | | ||||| || ||||| Sbjct 5431 GAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACG 5375 Query 30437 CTCTTGGTCGTGAGGAGGGG 30456 | ||||| ||||||||||| Sbjct 5374 CGTTTGGTGGTGAGGAGGGG 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406280510283312