Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq353 114 1e-20
>seq353
Length=20357
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899
|| || || || ||||| | || ||||| |||| |||| ||||||| | ||||||
Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990
Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959
||||| ||||| |||| | |||| | | || || | || || ||||| |||
Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930
Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019
| ||||| ||| || || | ||||||||||||||| || || || || |||||||||||
Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870
Query 30020 CCCGACCTCTGGTAGAGCTGACA 30042
| ||| | ||||||||||| ||
Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847
Score = 113 bits (124), Expect = 4e-20
Identities = 258/380 (68%), Gaps = 10/380 (3%)
Strand=Plus/Minus
Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141
|||||| || || || ||||| | || ||| ||||||||||||| | | ||
Sbjct 5729 GTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGAG 5670
Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30201
||| | ||| |||||| ||| | || |||| | |||||| || |||||
Sbjct 5669 GCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCCC 5610
Query 30202 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30261
| || |||||||| | | ||||| ||||| || ||||| |||| |||||||||
Sbjct 5609 CTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGAA 5550
Query 30262 CCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320
||||||||| || |||||||| ||||| | | | | || | ||| |||||| | |
Sbjct 5549 CCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGGA 5491
Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA-GAGA-GCTCTTTG-- 30376
| || | || |||||| ||||||||||||| | | |||| | | |||| | | | ||
Sbjct 5490 ACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGA-CGCCTTGTGAGGAGAGGGTGTGTGAC 5432
Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436
||| ||| || || |||||| || ||||| | | ||||| || |||||
Sbjct 5431 GAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACG 5375
Query 30437 CTCTTGGTCGTGAGGAGGGG 30456
| ||||| |||||||||||
Sbjct 5374 CGTTTGGTGGTGAGGAGGGG 5355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406280510283312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |