Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq88 102 5e-17
seq4893 91.5 9e-14
seq2035 87.8 1e-12
>seq88
Length=36327
Score = 102 bits (112), Expect = 5e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||||||||||| |||||||| || || || | || || | || ||
Sbjct 33095 ACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCCTCG 33036
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| || |||||||| || | ||||| ||||| || || | |||||||| ||| |
Sbjct 33035 AGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGG 32976
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || | || || | ||| |||||| ||| || |||| || || || ||
Sbjct 32975 ATC-TTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTCTT 32917
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || ||||| |||||||||||
Sbjct 32916 TCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
Score = 91.5 bits (100), Expect = 9e-14
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| |||||||| ||||| || || || ||||| ||||| || || | || || ||||||
Sbjct 32861 TGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGT 32802
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || ||||| || | ||||| ||||| || || | ||||||||||| |||| ||
Sbjct 32801 TTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATC-TT 32743
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| |||||| | || ||||| |||||| || | ||| || || || |||||
Sbjct 32742 CGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 32683
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || |||||
Sbjct 32682 CAGGGTCTTGACGAAGATTTGCAT 32659
>seq4893
Length=312
Score = 91.5 bits (100), Expect = 9e-14
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553
|| |||||| || | ||||||||||| || ||||| || || || || ||| ||||
Sbjct 300 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 241
Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613
|| | || || || || || || | ||||| |||||||| || | |||||||||||
Sbjct 240 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 181
Query 34614 TGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672
|||| || | || ||| | || |||||| ||||||||| |||| || ||||
Sbjct 180 CTGGATC-TTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCG 122
Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || | || || || || || |||||
Sbjct 121 TCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
>seq2035
Length=5329
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||||||||||| || || || ||||| || || || | | || ||||| ||
Sbjct 1046 TGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCCTCAAGCTGC 1105
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
|| || ||||| || | ||||| ||||| || || | ||||||||||| |||| ||
Sbjct 1106 TTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC-TT 1164
Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
| || || | |||||||| ||| |||||| || | ||| || || || || |
Sbjct 1165 GGACTTGACATTGTCGATTGTGTCGCTCG-ACTCCACCTCAAGGGTGATAGTCTTGCCCG 1223
Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707
| | || ||||| || |||||||||
Sbjct 1224 TGAGGGTCTTCACGAAGATCTGCATG 1249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314706447310388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |