Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq353 123 2e-23 >seq353 Length=20357 Score = 123 bits (136), Expect = 2e-23 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| ||||| ||| | ||||||||| | || |||||||||||||| || || Sbjct 5846 CTGCCAGCTCTACCAACGCTCGTGCGACATGGGGCTGGGCGTGCCGTTCAACATCGCCAG 5905 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754 ||||| ||||| ||| ||||| | || || || ||| | |||| || ||| |||| Sbjct 5906 CTACGCGCTGCTGACGCACATGCTGGCGCACGT-GTGCGACCTGGTGCCCGGGTCGCTG- 5963 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 | |||| |||| || ||||| | |||||||||||| | || |||| || || Sbjct 5964 -ACCCACGTCATGGGCGACGCGCACGTGTACCTGAACCACGTGGACGCGCTCGAGACGCA 6022 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 |||||| || ||||| | || ||||| |||| Sbjct 6023 GCTGCAGCGCGAGCCGAGGCCATTCCCGGAGCT 6055 Score = 123 bits (136), Expect = 2e-23 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||| || | ||||| || |||||||| || |||| || | ||||||| Sbjct 6055 AGCTCCGGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTC 5996 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACG 6616 ||||| | ||||| || |||| |||| | |||| ||| || |||| | ||| Sbjct 5995 AGGTACACGTGCGCGTCGCCCATGACGTGGGT--CAGCGACCCGGGCACCAGGTCGCAC- 5939 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || || | ||||| ||| ||||| ||||| || || |||||||||||||| || | | Sbjct 5938 ACGTGCGCCAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGC 5879 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | ||| ||||| |||||||||||| Sbjct 5878 CCCATGTCGCACGAGCGTTGGTAGAGCTGGCAG 5846 Score = 111 bits (122), Expect = 1e-19 Identities = 210/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 34310 CTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG 34369 ||||| || | || || ||||||||||||| |||| || || || || || |||||| Sbjct 5442 CTCTCCTCACAAGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTTGACAAG 5501 Query 34370 CGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGA 34429 | || | | || || | |||||| ||| |||| || || ||||||||||||||| | Sbjct 5502 CTCGGCCTGACCTCCCGCGCGGAGGGGGACCTGGGTCCCGTGTACGGGTTCCAGTGGCGG 5561 Query 34430 CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489 ||||| || ||| |||| || |||| | ||||| || || ||||| | |||||| Sbjct 5562 CACTTCGGCGCGCAGTACGTGGACAGCGCGACCGACTACTCCGGCCAGGGGGTCGACCAG 5621 Query 34490 CTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGC 34549 ||| | | | | |||| || | ||||| ||| | | ||||| | || Sbjct 5622 CTGGCGCGCATCGTGCACACGCTGCGGACCAACCCCTTCGACCGCCGCCTCGTGCTCAGC 5681 Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609 || ||||||||| || | || |||| ||||| || ||||||| || ||| Sbjct 5682 GCCTGGAACCCGGCCGACATGCCCAACATGGTCCTCCCGCCCTGCCACATGTTCGCCCAG 5741 Query 34610 TTCTACGTC 34618 ||||||||| Sbjct 5742 TTCTACGTC 5750 Score = 111 bits (122), Expect = 1e-19 Identities = 210/309 (68%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||| ||| || ||||||| || ||||| |||| || | || ||| Sbjct 5750 GACGTAGAACTGGGCGAACATGTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGG 5691 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 |||||| |||| | ||||| | | ||| ||||| | || |||| | | Sbjct 5690 GTTCCAGGCGCTGAGCACGAGGCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGAT 5631 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | | ||||||||| | ||||| || || ||||| | |||| || |||| ||| Sbjct 5630 GCGCGCCAGCTGGTCGACCCCCTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGC 5571 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 || ||||| | ||||||||||||||| || || |||| ||| |||||| | || || | Sbjct 5570 GCCGAAGTGCCGCCACTGGAACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGT 5511 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 | || ||||||| || || || || || |||| ||||||||||||| || || | Sbjct 5510 CAGGCCGAGCTTGTCAAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTG 5451 Query 7027 GGACGAGAG 7035 || ||||| Sbjct 5450 TGAGGAGAG 5442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228578601920