Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq353 123 2e-23
>seq353
Length=20357
Score = 123 bits (136), Expect = 2e-23
Identities = 158/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| ||||| ||| | ||||||||| | || |||||||||||||| || ||
Sbjct 5846 CTGCCAGCTCTACCAACGCTCGTGCGACATGGGGCTGGGCGTGCCGTTCAACATCGCCAG 5905
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754
||||| ||||| ||| ||||| | || || || ||| | |||| || ||| ||||
Sbjct 5906 CTACGCGCTGCTGACGCACATGCTGGCGCACGT-GTGCGACCTGGTGCCCGGGTCGCTG- 5963
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
| |||| |||| || ||||| | |||||||||||| | || |||| || ||
Sbjct 5964 -ACCCACGTCATGGGCGACGCGCACGTGTACCTGAACCACGTGGACGCGCTCGAGACGCA 6022
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845
|||||| || ||||| | || ||||| ||||
Sbjct 6023 GCTGCAGCGCGAGCCGAGGCCATTCCCGGAGCT 6055
Score = 123 bits (136), Expect = 2e-23
Identities = 158/213 (74%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559
|||| ||||| || | ||||| || |||||||| || |||| || | |||||||
Sbjct 6055 AGCTCCGGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTC 5996
Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACG 6616
||||| | ||||| || |||| |||| | |||| ||| || |||| | |||
Sbjct 5995 AGGTACACGTGCGCGTCGCCCATGACGTGGGT--CAGCGACCCGGGCACCAGGTCGCAC- 5939
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|| || || | ||||| ||| ||||| ||||| || || |||||||||||||| || | |
Sbjct 5938 ACGTGCGCCAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGC 5879
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|||||||| | ||| ||||| ||||||||||||
Sbjct 5878 CCCATGTCGCACGAGCGTTGGTAGAGCTGGCAG 5846
Score = 111 bits (122), Expect = 1e-19
Identities = 210/309 (68%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 34310 CTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG 34369
||||| || | || || ||||||||||||| |||| || || || || || ||||||
Sbjct 5442 CTCTCCTCACAAGGCGTCAAGATCTGGGACGGCAACGGCTCGCGCGAGTTCCTTGACAAG 5501
Query 34370 CGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGA 34429
| || | | || || | |||||| ||| |||| || || ||||||||||||||| |
Sbjct 5502 CTCGGCCTGACCTCCCGCGCGGAGGGGGACCTGGGTCCCGTGTACGGGTTCCAGTGGCGG 5561
Query 34430 CACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAG 34489
||||| || ||| |||| || |||| | ||||| || || ||||| | ||||||
Sbjct 5562 CACTTCGGCGCGCAGTACGTGGACAGCGCGACCGACTACTCCGGCCAGGGGGTCGACCAG 5621
Query 34490 CTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGC 34549
||| | | | | |||| || | ||||| ||| | | ||||| | ||
Sbjct 5622 CTGGCGCGCATCGTGCACACGCTGCGGACCAACCCCTTCGACCGCCGCCTCGTGCTCAGC 5681
Query 34550 GCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAA 34609
|| ||||||||| || | || |||| ||||| || ||||||| || |||
Sbjct 5682 GCCTGGAACCCGGCCGACATGCCCAACATGGTCCTCCCGCCCTGCCACATGTTCGCCCAG 5741
Query 34610 TTCTACGTC 34618
|||||||||
Sbjct 5742 TTCTACGTC 5750
Score = 111 bits (122), Expect = 1e-19
Identities = 210/309 (68%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786
||||||||| ||| || ||||||| || ||||| |||| || | || |||
Sbjct 5750 GACGTAGAACTGGGCGAACATGTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGG 5691
Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846
|||||| |||| | ||||| | | ||| ||||| | || |||| | |
Sbjct 5690 GTTCCAGGCGCTGAGCACGAGGCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGAT 5631
Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906
| | ||||||||| | ||||| || || ||||| | |||| || |||| |||
Sbjct 5630 GCGCGCCAGCTGGTCGACCCCCTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGC 5571
Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966
|| ||||| | ||||||||||||||| || || |||| ||| |||||| | || || |
Sbjct 5570 GCCGAAGTGCCGCCACTGGAACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGT 5511
Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026
| || ||||||| || || || || || |||| ||||||||||||| || || |
Sbjct 5510 CAGGCCGAGCTTGTCAAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTG 5451
Query 7027 GGACGAGAG 7035
|| |||||
Sbjct 5450 TGAGGAGAG 5442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448228578601920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |