Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 114 1e-20
seq88 104 2e-17
seq4893 96.9 3e-15
>seq2035
Length=5329
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||| | || || |||||||| || || ||||| ||||| | || || | |
Sbjct 1033 GCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCC 1092
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| |||||||| ||||| ||||| || || ||||||||||| | ||| | || ||| ||
Sbjct 1093 ATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 1152
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| | | | || |||||||||||||| || | |||||
Sbjct 1153 GTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGAT 1212
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || ||||| || || || || ||||| |||||
Sbjct 1213 AGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248
>seq88
Length=36327
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||||| || || || ||||| ||||| | ||| || || | || || || |||
Sbjct 32861 TGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTGCGACCATCCTCGAGTTGT 32802
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||||||||| || || ||||||||||| | || | | ||| |||||| ||| |||
Sbjct 32801 TTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTC 32742
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
| | | ||| | | | || ||| |||||||| || | |||||| | || || ||
Sbjct 32741 -GACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 32683
Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284
||| || || || |||||||||||
Sbjct 32682 CAGGGTCTTGACGAAGATTTGCAT 32659
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||||| || || || || || |||| || || || | || ||
Sbjct 33324 CACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCATCCTC 33265
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| |||||||| || || | |||||||||||| | ||| | | ||| || ||| |
Sbjct 33264 CAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTATCC-T 33206
Query 39195 GATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|| | | || |||| ||| | | | |||||| || ||||| |||| || || |
Sbjct 33205 GAATCTTTGACTTGA-CGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAATCGTC 33147
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || || || ||||| |||||
Sbjct 33146 TTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115
>seq4893
Length=312
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || | ||||||||| || || || || || ||| || || || |||| ||
Sbjct 297 CACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTC 238
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| |||||||| || || || ||||||||||| | || | || ||| ||||||
Sbjct 237 CAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTG 178
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250
||| ||| |||| ||| | | | ||| || ||| |||||| |||| ||| ||
Sbjct 177 GATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCT---CTCCACCTCCAGCGTAATCG 122
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || || || || |||||||||||
Sbjct 121 TCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429514001014868
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |