Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq88 98.7 7e-16 seq2403 89.7 3e-13 >seq88 Length=36327 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| |||||||| || ||||| | || ||||| || | Sbjct 32887 ATGCAGATTTTCGTGAAGACCCTGACGGGAAAGACCATCACATTGGAGGTTGAGTCGTCA 32946 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || || || || ||| | || || || || Sbjct 32947 GACACGATTGACAATGTGAAGTC-GAAGATCCAAGATAAGGAGGGTATCCCTCCTGACCA 33005 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| ||||| || || | || ||||| ||| ||||| Sbjct 33006 GCAGCGCCTGATTTTTGCCGGCAAGCAACTCGAGGATGGTCGGACTTTGTCCGACTACAA 33065 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 33066 CATTCAGAAGGAG 33078 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| ||||| ||||| || || || Sbjct 33115 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATTACTCTGGAAGTGGAATCTTCG 33174 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || ||| ||| || || || ||| | || ||||| || Sbjct 33175 GATACGATCGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 33234 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || ||||| || |||| || | || ||| | ||| |||||| Sbjct 33235 CAGCGTTTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCCGACTACAAC 33294 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 33295 ATCCAGAAGGAG 33306 >seq2403 Length=4098 Score = 89.7 bits (98), Expect = 3e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||| ||||| || ||||||||||| || || ||||| ||||| || || ||| ||| Sbjct 2357 TGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGG 2298 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || ||| | || | || || ||||| || || | || || || || Sbjct 2297 ACACCATCGACAATGTCAAGTC-GAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 2239 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| |||||||| || || || | |||||| | || |||||| Sbjct 2238 CAGCGCCTGATCTTTGCGGGCAAACAGCTCGAGGATGGCCGCACTCTCTCTGACTACAAC 2179 Query 23791 ATACAAAA 23798 || || || Sbjct 2178 ATTCAGAA 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337984734746288