Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq88 145 2e-29
seq4893 127 5e-24
seq2035 122 2e-22
seq2403 105 2e-17
seq4316 89.7 1e-12
seq5961 86.0 1e-11
seq3754 86.0 1e-11
>seq88
Length=36327
Score = 145 bits (160), Expect = 2e-29
Identities = 146/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| || || || ||||||| ||| || |||| |||||| | ||||||
Sbjct 32642 AGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCT 32583
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| || || || || || || || ||||||||||| || || ||||||||
Sbjct 32582 TCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| |||||||| || |||| ||||| || | ||||| |||
Sbjct 32522 TGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTC 32463
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 32462 TTGCCGGTCA 32453
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | |||||||||||| |||||| ||| || |||| ||||||||| | | |||
Sbjct 32879 CGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTG 32820
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || || || || || || || || || || ||||| || ||||||||
Sbjct 32819 CGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCC 32760
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| || ||||||||||| || | ||||| || |
Sbjct 32759 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 32700
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || |||| || || | ||| | ||||||
Sbjct 32699 GTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | |||||| ||| || || || | ||||| |||| |||||| | |||||
Sbjct 33098 AGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCC 33039
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || || || || || || || ||||| || || ||||| ||||| |||
Sbjct 33038 TCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 32979
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| || || |||||||| | || || || || ||||| |||
Sbjct 32978 TGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTC 32919
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| ||||||| || || | ||| | |||||
Sbjct 32918 TTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887
>seq4893
Length=312
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555
|||||||| || | ||| | ||| || || |||| ||||| ||| | ||| | |
Sbjct 305 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 246
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|| || || | |||||| || ||||| || || || || ||||| || ||||| || |||
Sbjct 245 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 186
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
||||| |||||||| ||| || ||||| ||||||||| | ||||| || | |||
Sbjct 185 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 126
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || | || |||| ||| | ||||||
Sbjct 125 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88
>seq2035
Length=5329
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| ||| || || |||| ||||||||| | | || || |||||
Sbjct 1037 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCC 1096
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| || || || ||||| || || || || ||||||||
Sbjct 1097 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1156
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||| ||||| | ||||| || | ||||| |||
Sbjct 1157 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 1216
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 1217 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248
>seq2403
Length=4098
Score = 105 bits (116), Expect = 2e-17
Identities = 130/178 (73%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| || | | ||| | ||||| || ||||| || || || ||||| || || ||
Sbjct 2180 TTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATCAGGCGCTGC 2239
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
|||||||| ||||| || |||||||| |||||||| ||| ||| |||||||||||
Sbjct 2240 TGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCC 2299
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
|||| || || || | ||||| ||||| ||||| | || || | ||| | ||||
Sbjct 2300 GAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCA 2357
>seq4316
Length=425
Score = 89.7 bits (98), Expect = 1e-12
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 371370 TAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTAT 371429
||||||||| | || |||||| ||||||||| | |||||| ||||| || || ||
Sbjct 333 TAATTTATGTAATCTTATACCAGGAGTTCTCATATTCATTATCGTGGTAATGAAATTCAT 274
Query 371430 AGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGAC 371486
||| |||| | ||| |||||||| | ||||||| ||||||||||||||||||
Sbjct 273 AGCTCCTAATAAGGAACTTATACCTGATAAATGTAAAGCAAATATTGCTAAATCGAC 217
>seq5961
Length=206
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651
|| ||||||||||| || ||||||||||| |||||||| ||| || ||||| |||
Sbjct 204 TGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTG 145
Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711
|| | ||| || || | ||||||||||||||| || | || |||| ||| | ||||
Sbjct 144 TCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGC 85
Query 225712 AT 225713
||
Sbjct 84 AT 83
>seq3754
Length=863
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732
||||||||||| || |||||||| | ||||||| | | |||||||| || || || | |
Sbjct 569 TCAGGATGACCGAAGAATCAGAAAAGATGTTGAAATAAAATAGGATCACCACCTCCAGCT 628
Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
| ||||| || ||||||||||||||||| |||||||
Sbjct 629 GTTTCAAAGAATGATGTATTAAAATTTCTATCTGTTAAAA 668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192438974108984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |