Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq88 145 2e-29 seq4893 127 5e-24 seq2035 122 2e-22 seq2403 105 2e-17 seq4316 89.7 1e-12 seq5961 86.0 1e-11 seq3754 86.0 1e-11 >seq88 Length=36327 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || ||||||| ||| || |||| |||||| | |||||| Sbjct 32642 AGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGACAAAGTCCGACCATCT 32583 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || || || || || || ||||||||||| || || |||||||| Sbjct 32582 TCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 32523 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| |||||||| || |||| ||||| || | ||||| ||| Sbjct 32522 TGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCACCTCAAGGGTGATGGTC 32463 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 32462 TTGCCGGTCA 32453 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||||||||| |||||| ||| || |||| ||||||||| | | ||| Sbjct 32879 CGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGAAAGAGTG 32820 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || || || || || || || || || ||||| || |||||||| Sbjct 32819 CGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATACCC 32760 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 32759 TCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 32700 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | ||| | |||||| Sbjct 32699 GTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| ||| || || || | ||||| |||| |||||| | ||||| Sbjct 33098 AGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCGACCATCC 33039 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || || || || || ||||| || || ||||| ||||| ||| Sbjct 33038 TCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 32979 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || || |||||||| | || || || || ||||| ||| Sbjct 32978 TGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGTGATGGTC 32919 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || || | ||| | ||||| Sbjct 32918 TTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 >seq4893 Length=312 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 |||||||| || | ||| | ||| || || |||| ||||| ||| | ||| | | Sbjct 305 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 246 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || | |||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 245 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 186 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||| ||||||||| | ||||| || | ||| Sbjct 185 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 126 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || | || |||| ||| | |||||| Sbjct 125 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq2035 Length=5329 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||| || || |||| ||||||||| | | || || ||||| Sbjct 1037 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATCC 1096 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| || || || || |||||||| Sbjct 1097 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1156 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| ||||| | ||||| || | ||||| ||| Sbjct 1157 TGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 1216 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 1217 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq2403 Length=4098 Score = 105 bits (116), Expect = 2e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || | | ||| | ||||| || ||||| || || || ||||| || || || Sbjct 2180 TTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATCAGGCGCTGC 2239 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 |||||||| ||||| || |||||||| |||||||| ||| ||| ||||||||||| Sbjct 2240 TGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCC 2299 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 |||| || || || | ||||| ||||| ||||| | || || | ||| | |||| Sbjct 2300 GAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCA 2357 >seq4316 Length=425 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 371370 TAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTAT 371429 ||||||||| | || |||||| ||||||||| | |||||| ||||| || || || Sbjct 333 TAATTTATGTAATCTTATACCAGGAGTTCTCATATTCATTATCGTGGTAATGAAATTCAT 274 Query 371430 AGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGAC 371486 ||| |||| | ||| |||||||| | ||||||| |||||||||||||||||| Sbjct 273 AGCTCCTAATAAGGAACTTATACCTGATAAATGTAAAGCAAATATTGCTAAATCGAC 217 >seq5961 Length=206 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || ||||||||||| || ||||||||||| |||||||| ||| || ||||| ||| Sbjct 204 TGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTG 145 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || | ||| || || | ||||||||||||||| || | || |||| ||| | |||| Sbjct 144 TCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGC 85 Query 225712 AT 225713 || Sbjct 84 AT 83 >seq3754 Length=863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 ||||||||||| || |||||||| | ||||||| | | |||||||| || || || | | Sbjct 569 TCAGGATGACCGAAGAATCAGAAAAGATGTTGAAATAAAATAGGATCACCACCTCCAGCT 628 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | ||||| || ||||||||||||||||| ||||||| Sbjct 629 GTTTCAAAGAATGATGTATTAAAATTTCTATCTGTTAAAA 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192438974108984