Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq353 109 4e-19 >seq353 Length=20357 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 || || || || ||||| | || ||||| || |||| |||||||||| ||||| Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 ||||| || || |||| | |||| | | || || | || || ||||| ||| Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 | ||||| ||| || || | ||||||||||||||| || ||||| || ||||||||||| Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870 Query 29792 CCTGACCTCTGGTAGAGCTGGCA 29814 | || | |||||||||||||| Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCG 30073 |||| |||| |||||||||||||||||| || |||||||| ||||| | | | | || Sbjct 5568 CGAAGTGCCGCCACTGGAACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC- 5510 Query 30074 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133 | ||| |||||| | || || | || |||||| ||||||||||||| || || | Sbjct 5509 AGGCCGAGCTTGTCAAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGT 5450 Query 30134 TCGGAGA-GCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30190 ||||| | | | || ||| ||| || || |||||| || ||||| | | Sbjct 5449 GAGGAGAGGGTGTGTGACGAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATC 5393 Query 30191 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||||| || ||||| | ||||| ||||||||||| Sbjct 5392 ACGGCTTTGGTGAAGACGCGTTTGGTGGTGAGGAGGGG 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406133321111896