Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq353 109 4e-19
>seq353
Length=20357
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671
|| || || || ||||| | || ||||| || |||| |||||||||| |||||
Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990
Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731
||||| || || |||| | |||| | | || || | || || ||||| |||
Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930
Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791
| ||||| ||| || || | ||||||||||||||| || ||||| || |||||||||||
Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870
Query 29792 CCTGACCTCTGGTAGAGCTGGCA 29814
| || | ||||||||||||||
Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847
Score = 86.0 bits (94), Expect = 5e-12
Identities = 153/218 (70%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCG 30073
|||| |||| |||||||||||||||||| || |||||||| ||||| | | | | ||
Sbjct 5568 CGAAGTGCCGCCACTGGAACCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC- 5510
Query 30074 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30133
| ||| |||||| | || || | || |||||| ||||||||||||| || || |
Sbjct 5509 AGGCCGAGCTTGTCAAGGAACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGT 5450
Query 30134 TCGGAGA-GCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30190
||||| | | | || ||| ||| || || |||||| || ||||| | |
Sbjct 5449 GAGGAGAGGGTGTGTGACGAG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATC 5393
Query 30191 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228
||||| || ||||| | ||||| |||||||||||
Sbjct 5392 ACGGCTTTGGTGAAGACGCGTTTGGTGGTGAGGAGGGG 5355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406133321111896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |