Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq353 118 8e-22 >seq353 Length=20357 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 || || || || ||||| | || ||||| |||| |||| |||||||| | |||||| Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 ||||| ||||| |||| | |||| | | || || | || || ||||| ||| Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930 Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285 | ||||| ||| || || | ||||||||||||||| || || || || ||||||||||| Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870 Query 27286 CCCGACCTCTGGTAGAGCTGACA 27308 | ||| | ||||||||||| || Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847 Score = 105 bits (116), Expect = 5e-18 Identities = 254/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || ||||| | || ||| ||||||||||||| | | || Sbjct 5729 GTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGAG 5670 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 ||| | ||| |||||| ||| | || |||| | |||||| || ||||| Sbjct 5669 GCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCCC 5610 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 | || |||||||| | ||||| ||||| || ||||| |||| ||| ||||| Sbjct 5609 CTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGAA 5550 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 ||||||||| || |||||||| ||||| | | | | || | ||| |||||| | | Sbjct 5549 CCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGGA 5491 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA-GCTCTTTG--G 27643 | || | || |||||| ||||||||||||| || || | ||||| | | | || | Sbjct 5490 ACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGTGAGGAGAGGGTGTGTGACG 5431 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 || ||| || || |||||| || ||||| | | ||||| || ||||| | Sbjct 5430 AG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACGC 5374 Query 27704 TCTTGGTCGTGAGGAGGGG 27722 ||||| ||||||||||| Sbjct 5373 GTTTGGTGGTGAGGAGGGG 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480017664716