Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq353 118 8e-22
>seq353
Length=20357
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165
|| || || || ||||| | || ||||| |||| |||| |||||||| | ||||||
Sbjct 6049 GGGAATGGCCTCGGCTCGCGCTGCAGCTGCGTCTCGAGCGCGTCCACGTGGTTCAGGTAC 5990
Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225
||||| ||||| |||| | |||| | | || || | || || ||||| |||
Sbjct 5989 ACGTGCGCGTCGCCCATGACGTGGGTCAGCGACCCGGGCACCAGGTCGCACACGTGCGCC 5930
Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285
| ||||| ||| || || | ||||||||||||||| || || || || |||||||||||
Sbjct 5929 AGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGCCCCATGTCG 5870
Query 27286 CCCGACCTCTGGTAGAGCTGACA 27308
| ||| | ||||||||||| ||
Sbjct 5869 CACGAGCGTTGGTAGAGCTGGCA 5847
Score = 105 bits (116), Expect = 5e-18
Identities = 254/379 (67%), Gaps = 8/379 (2%)
Strand=Plus/Minus
Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407
|||||| || || || ||||| | || ||| ||||||||||||| | | ||
Sbjct 5729 GTGGCAGGGCGGGAGGACCATGTTGGGCATGTCGGCCGGGTTCCAGGCGCTGAGCACGAG 5670
Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467
||| | ||| |||||| ||| | || |||| | |||||| || |||||
Sbjct 5669 GCGGCGGTCGAAGGGGTTGGTCCGCAGCGTGTGCACGATGCGCGCCAGCTGGTCGACCCC 5610
Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527
| || |||||||| | ||||| ||||| || ||||| |||| ||| |||||
Sbjct 5609 CTGGCCGGAGTAGTCGGTCGCGCTGTCCACGTACTGCGCGCCGAAGTGCCGCCACTGGAA 5550
Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTC-CCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586
||||||||| || |||||||| ||||| | | | | || | ||| |||||| | |
Sbjct 5549 CCCGTACACGGGACCCAGGTCCCCCTCCGCGCGGGAGGTC-AGGCCGAGCTTGTCAAGGA 5491
Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA-GCTCTTTG--G 27643
| || | || |||||| ||||||||||||| || || | ||||| | | | || |
Sbjct 5490 ACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCTTGTGAGGAGAGGGTGTGTGACG 5431
Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703
|| ||| || || |||||| || ||||| | | ||||| || ||||| |
Sbjct 5430 AG---GTGTCGCCGGAGATGAACCAGAGGAGCTCGGCGATCACGGCTTTGGTGAAGACGC 5374
Query 27704 TCTTGGTCGTGAGGAGGGG 27722
||||| |||||||||||
Sbjct 5373 GTTTGGTGGTGAGGAGGGG 5355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369480017664716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |