Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq88 111 4e-19 seq2035 100 7e-16 seq4893 95.1 3e-14 seq2403 89.7 1e-12 >seq88 Length=36327 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||| ||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 33321 CAAG-TGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCGACCATCCTCCA 33263 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || |||||||| | | ||||||||| | | ||| || ||||| || |||| Sbjct 33262 ACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGGATACCCTCCTTATCCTGAA 33203 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | | || ||| || ||||| |||||||| || || | Sbjct 33202 TCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACTTCCAGAGTAATCGTCTTCC 33143 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| ||||||| |||||| Sbjct 33142 CCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||| || || |||||||| |||| ||||| | Sbjct 33105 GAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGACAAAGTCCG 33046 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| || || || | ||||||||| | | ||| || || Sbjct 33045 ACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 32986 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || ||| | || | ||||||| ||| || || | || Sbjct 32985 CTTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACCTCCAATGT 32926 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||||||||| | |||||| Sbjct 32925 GATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 >seq2035 Length=5329 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||| || ||||| |||||||| | | || || ||||| Sbjct 1036 GAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGAGAGGGTCCTGCCATC 1095 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | | ||| || ||||| || Sbjct 1096 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1155 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | |||| ||| || ||||| || ||||| Sbjct 1156 CTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGT 1215 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||||||||||| |||||| Sbjct 1216 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq4893 Length=312 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||| | ||| | ||| || || | || || ||||| Sbjct 279 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 220 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 || |||| ||||||||||| | || || ||||| || || || || ||||| | Sbjct 219 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 160 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | ||||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 159 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 100 Query 152093 GAAGACCTGCAT 152104 ||||| ||||| Sbjct 99 GAAGATTTGCAT 88 >seq2403 Length=4098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || || |||||||| || | | ||| | ||||| || || ||| || || ||||| Sbjct 2171 TTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATC 2230 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | | || || ||||| || || || || |||||| | || Sbjct 2231 AGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 2290 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || || || || || || || |||||||| |||||||||||| Sbjct 2291 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 2350 Query 152097 ACCTGCA 152103 | ||||| Sbjct 2351 ATCTGCA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153731567826156