Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05] 6,036 sequences; 34,745,808 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq88 190 4e-43 seq2403 167 5e-36 seq2035 150 4e-31 seq4893 125 1e-23 seq1383 111 3e-19 >seq88 Length=36327 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | |||||||| || ||||| ||||| || | Sbjct 32886 ACCACCGCGCAGGCGCAGGACAAGGTGCAGAGTGCTTTCCTTCTGGATATTGTAATCCGA 32827 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| |||||||| || ||||| |||| || || |||||| || Sbjct 32826 AAGAGTGCGACCATCCTCGAGTTGTTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGG 32767 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 32766 AATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTGTCGGAAGACTCCAC 32707 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 32706 CTCGAGGGTGATAGTCTTCCCGGTCAGGGTCTTGACGAAGATTTGCAT 32659 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | || || || || |||||||||||||| | Sbjct 33341 CCGCCACGGAGACGCAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGGAC 33282 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| | || || || || ||||||||||| || ||||| || Sbjct 33281 AGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCTGGGGGG 33222 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||||| || ||| | ||||| || ||||||| ||| ||| Sbjct 33221 ATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCCGAAGATTCCACT 33162 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| |||||||| ||||| | ||||| ||||| |||||||| Sbjct 33161 TCCAGAGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 33115 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || |||| || | ||||| || || || ||||||||||| | Sbjct 33113 CCACCGCGGAGCCGGAGGACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAC 33054 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| ||||| || |||||||| |||| || || |||||| || Sbjct 33053 AAAGTCCGACCATCCTCGAGTTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGAGGG 32994 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| ||||||||||| | || || | || || ||||| || | || || Sbjct 32993 ATACCCTCCTTATCTTGGATCTTCGACTTCACATTGTCAATCGTGTCTGACGACTCAACC 32934 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 32933 TCCAATGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAAATCTGCAT 32887 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||||||||| || || || | || || |||||||| || ||||| | Sbjct 32658 ACCACCACGCAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTTTGGATATTATAGTCGGA 32599 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | || || |||||||| |||| || || ||||| ||| Sbjct 32598 CAAAGTCCGACCATCTTCCAACTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCGGGCGG 32539 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||| || || || | || || Sbjct 32538 GATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCAGAGGACTCCAC 32479 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 32478 CTCAAGGGTGATGGTCTTGCCGGTCA 32453 >seq2403 Length=4098 Score = 167 bits (184), Expect = 5e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||||| || |||||||||||||| || ||||| || ||||||||| Sbjct 2171 TTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGTTTGCCCGCAAAGATC 2230 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 2231 AGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 2290 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||| | ||||| ||||| ||||| ||||||||||| | ||||| ||||| Sbjct 2291 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 2350 Query 283092 ATCTGCA 283098 ||||||| Sbjct 2351 ATCTGCA 2357 >seq2035 Length=5329 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||||| || || ||||| ||||| || | Sbjct 1021 ACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAATCCGA 1080 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||||||| || || || || |||||||||| || || |||||| || Sbjct 1081 GAGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 1140 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| | || || Sbjct 1141 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCGCTCGACTCCAC 1200 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 1201 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1248 >seq4893 Length=312 Score = 125 bits (138), Expect = 1e-23 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 282880 GCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGC 282939 |||| | || |||| || |||||||| || || |||||||||||||| || || | Sbjct 307 GCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCC 248 Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 | || ||||| | || || || || || |||| || || ||||| ||||| |||| Sbjct 247 GCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCT 188 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGA 283058 ||||||| |||||||| | || ||| | ||||| ||||| | |||| || || || || Sbjct 187 CCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTG-AGCTCTCCACCTCCAGC 129 Query 283059 GTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || | ||||| ||||| || ||||| Sbjct 128 GTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 88 >seq1383 Length=8527 Score = 111 bits (122), Expect = 3e-19 Identities = 559/870 (64%), Gaps = 42/870 (5%) Strand=Plus/Plus Query 229558 TCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGGACCACGGAGGAAGTCCCCCTAA 229617 ||||| | ||||| |||||||| | ||| | || |||||| | ||||| | ||| Sbjct 6914 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGACCTC- 6972 Query 229618 ATGCA--GACGTCGTCGACTGGCGCGAGAAACTCAACGACGATGAACGCCATTTCATCAA 229675 | || ||| || ||||||| | | || ||||||||||||| | |||||| Sbjct 6973 -TCCAAGGACCTCCACGACTGGAACAACAAGATCAACGACGATGAGAAGTACTTCATCTC 7031 Query 229676 GCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGTGATGGAAAACTTGCAGACTAA 229735 ||||| |||| || || || | || ||||| ||||| | || ||| || | | | Sbjct 7032 TCACATCCTCGCTTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTG--GTCGAG 7089 Query 229736 C--TTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTTTTACGCATACCAGACGTTC 229793 | ||||||| ||| || |||||| ||||| || || |||| | ||||| | Sbjct 7090 CGCTTCAGCGGCGAGGTCCAGGTCCCGGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 7149 Query 229794 AATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGACGCGCTCATTTCCGACGAG 229853 | || | || || || || |||| || |||||| | ||| | | ||| Sbjct 7150 ATGGAGAACATCCACTCTGAGACCTACTCCCTGCTCATTGACACCTACAT---CAAGGAG 7206 Query 229854 CGAG---AGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCCGGCGGTCCATAACAAA 229910 | | |||| | | |||||| | |||||||| | |||||| || ||| || || Sbjct 7207 CCTGCCCAGCGCACGCACCTGTTCAATGCCATCGACACCATCCCCGCCATCCGCAAGAAG 7266 Query 229911 GCGCGTTGGGCTCAGAAGTGGCTGGAAC---CCAGTAAATCG---TTTGCAGAGCGTCTC 229964 || ||||| | | |||| | || |||| || ||| ||||| |||| || Sbjct 7267 GCCGACTGGGCCCTGCGGTGGATC--ACTGACCAG-AAGTCGACCTTTGCCCAGCGCCTG 7323 Query 229965 GTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCTGCGCCATCTTTTG 230023 ||||||| | ||| || |||||||| | ||| ||| || | ||||||| || Sbjct 7324 GTCGCGTTTGC-TGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTG 7382 Query 230024 GCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAACGAATTCATCAGCAG 230080 ||| ||| ||| ||| |||||||||| || | || ||||| ||||| | Sbjct 7383 GCT---CAAGAAGCGCGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCGCG 7439 Query 230081 GGACGAAGGTCTTCACCAGCAATTTGGCGAGG-TCTTGTATTCGAAGCTAAATAACAAAC 230139 ||||| ||||| ||| | | | || || | | ||| ||| | || |||||| | Sbjct 7440 TGACGAGGGTCTCCAC-ACCGACTTCGCCTGCCTGCTGTTCTCGCACCT---TAACAACC 7495 Query 230140 TACCTTTCGAAACGGTGA---AACAAATCGTCACAGAAGTAGTTGCAAAT-GAAAAGGAG 230195 || | | ||| | | | ||| || || | || || || || ||||| Sbjct 7496 GCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGACGCCGT-GCGCATCGAGCAGGAG 7554 Query 230196 TTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAA 230255 ||| | ||| || | || ||| || |||||||||| | | || ||| ||| Sbjct 7555 TTCCTCACCGAGGCCCTGCCGTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 7614 Query 230256 TATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAAC 230315 || || || ||||| || || || | |||| || || || ||||||| ||||| Sbjct 7615 TACATTGAGTTCGTCGCCGACCGCCTGCTCGTCGCCCTCGGCAACGAGAAGGTGTACCGG 7674 Query 230316 TCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTC 230375 || | |||||||||| || |||||| ||| || ||| || || || ||||||||| Sbjct 7675 TCGACAAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTC 7734 Query 230376 GAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 || ||||| ||| |||| || || |||||| Sbjct 7735 GAGAAGCGCGTCGGCGAGTACCAGAAGGCC 7764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046658249115544