Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chaetomium_20cochliodes_20[genbank_20GCA_5F001752565.1_202016-10-05]
6,036 sequences; 34,745,808 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq88 147 5e-30
seq4893 141 2e-28
seq2403 136 1e-26
seq979 91.5 4e-13
>seq88
Length=36327
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || || || || ||||||||||||||||| || |||
Sbjct 32662 CAAATCTTCGTCAAGACCCTGACCGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 32721
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| |||||||| || || || ||||| ||||||||
Sbjct 32722 ACCATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 32781
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || ||||| ||||| ||||| | |||||| | ||||| || ||
Sbjct 32782 CGCCTGATTTTTGCGGGCAAACAACTCGAGGATGGTCGCACTCTTTCGGATTACAATATC 32841
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||| || ||||| |||||
Sbjct 32842 CAGAAGGAAAGCACTCTGCACCTTGT 32867
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||| |||||||| ||| || |||||||| || || ||
Sbjct 32455 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGATACCATCGACAATGTTAAGTCG 32514
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || ||||| || |||||||| || || || || ||||| ||
Sbjct 32515 AAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTGATTTTTGCCGGCAAG 32574
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||| | |||||||| ||||| | |||| ||||| ||||||| || || || || ||
Sbjct 32575 CAGTTGGAAGATGGTCGGACTTTGTCCGACTATAATATCCAAAAGGAGTCGACCCTCCAC 32634
Query 178125 CTTGT 178129
|| ||
Sbjct 32635 CTCGT 32639
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||| || || || |||||| || ||
Sbjct 33118 CAGATCTTCGTCAAGACCCTCACGGGGAAGACGATTACTCTGGAAGTGGAATCTTCGGAT 33177
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| |||||||||||| || || || ||||| || ||||||||
Sbjct 33178 ACGATCGACAACGTCAAGTCAAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAG 33237
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || ||| | || ||||| ||||||| |||| || ||| ||
Sbjct 33238 CGTTTGATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCCGACTACAACATC 33297
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 33298 CAGAAGGA 33305
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || ||||| || ||||| | ||||| || ||||||
Sbjct 32890 CAGATTTTCGTGAAGACCCTGACGGGAAAGACCATCACATTGGAGGTTGAGTCGTCAGAC 32949
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| || || || || || |||||||| ||||||||
Sbjct 32950 ACGATTGACAATGTGAAGTCGAAGATCCAAGATAAGGAGGGTATCCCTCCTGACCAGCAG 33009
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || ||||| || || ||||| ||||| ||||| | |||| || ||| |
Sbjct 33010 CGCCTGATTTTTGCCGGCAAGCAACTCGAGGATGGTCGGACTTTGTCCGACTACAACATT 33069
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 33070 CAGAAGGA 33077
>seq4893
Length=312
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || || || || || ||||| || || |||||||| |||||||||
Sbjct 91 CAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCAGAC 150
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || || || ||||||||||||||
Sbjct 151 ACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 210
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||| | || || || ||||||| ||| || ||| ||
Sbjct 211 CGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAACATC 270
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 271 CAGAAGGA 278
>seq2403
Length=4098
Score = 136 bits (150), Expect = 1e-26
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || |||||||||||||| || ||| |||
Sbjct 2355 CAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGAC 2296
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || || ||||||||
Sbjct 2295 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 2236
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || ||||||||||| ||||| | ||||| | || || ||| |
Sbjct 2235 CGCCTGATCTTTGCGGGCAAACAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATT 2176
Query 178104 CAAAA 178108
|| ||
Sbjct 2175 CAGAA 2171
>seq979
Length=11123
Score = 91.5 bits (100), Expect = 4e-13
Identities = 178/263 (68%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| | ||| ||||| ||||| || | ||
Sbjct 4272 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTGCCGGT 4213
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
|||| ||||| | || ||| || |||||| | ||||||||| | ||| |
Sbjct 4212 CTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTGATAGTCTTACGACC 4153
Query 214248 TCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCATC 214307
| || | || |||||||| ||||| || | ||| || || ||| ||| ||| |
Sbjct 4152 GCGGCCGGCCTTCTCGTACTTCTCATACAGGGCCTCGAACTCGTCACCATAGCAATCGGC 4093
Query 214308 AAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTTT 214367
||| ||||| |||||||||||| | ||| |||| | ||| || | | ||| | ||
Sbjct 4092 AAGGCCGGGGCACTCGTTGGGGCACATCAGAGTCCACTCTCCGTTCTTCTCGACACGCTT 4033
Query 214368 CATGAAAAGGTCGGAAGTCCAGA 214390
|||||| ||||||| | ||||||
Sbjct 4032 CATGAAGAGGTCGGGAATCCAGA 4010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203638107942984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |